View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3510_high_4 (Length: 249)
Name: NF3510_high_4
Description: NF3510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3510_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 38754363 - 38754603
Alignment:
| Q |
1 |
gctttaaattagaattatttaatttcaattctacccgaatacaatatttaaacatgttaaaatcaattttattcaaatatcttaataggaagttaaactt |
100 |
Q |
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| T |
38754363 |
gctttaaattagaattatttaatttcaattctacccgaatacaatatttaaacatgttaaaatcaattttattcaaatatcttaatatgaagttaaactt |
38754462 |
T |
|
| Q |
101 |
caatatgagatttggagcttaaactnnnnnnntattagtgtcaatttgttgtctaactcacttttatatagtcatactcgtgccaaatataatatcatgt |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38754463 |
caatatgagatttggagcttaaact-aaaaactattagtgtcaatttgttgtctaactcacttttatatagtcatactcgtgtcaaatataatatcatgt |
38754561 |
T |
|
| Q |
201 |
ttgtaaaaacaaatgc---aagttaaatcactttaaattcat |
239 |
Q |
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|||| ||| |||||| ||||||||||||||||||||||| |
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| T |
38754562 |
ttgtgaaactaaatgcattaagttaaatcactttaaattcat |
38754603 |
T |
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