View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3511_high_1 (Length: 359)

Name: NF3511_high_1
Description: NF3511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3511_high_1
NF3511_high_1
[»] chr3 (4 HSPs)
chr3 (14-291)||(48236113-48236390)
chr3 (300-343)||(48236418-48236461)
chr3 (189-247)||(25252041-25252099)
chr3 (188-248)||(43381176-43381236)
[»] chr6 (1 HSPs)
chr6 (188-264)||(2732920-2732996)
[»] chr7 (1 HSPs)
chr7 (188-252)||(1110409-1110473)
[»] scaffold0491 (1 HSPs)
scaffold0491 (207-251)||(4388-4432)
[»] chr8 (3 HSPs)
chr8 (207-251)||(18737689-18737733)
chr8 (187-249)||(42843363-42843425)
chr8 (207-251)||(18747547-18747591)
[»] chr5 (1 HSPs)
chr5 (191-271)||(43283418-43283498)
[»] chr4 (1 HSPs)
chr4 (187-262)||(415131-415206)
[»] chr1 (4 HSPs)
chr1 (187-248)||(6025970-6026031)
chr1 (187-220)||(33651683-33651716)
chr1 (187-248)||(44417797-44417858)
chr1 (188-220)||(15592684-15592716)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 48236113 - 48236390
Alignment:
Q  14 aacctgtgcacgtaaggaggaaaaagtatattgtcataattgtgtaaacatattcttgtcataacaaaaagatgagtggcagtcaaagtttaagaagtgg 113  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236113 aacctgtgcatgtaaggaggaaaaagtatattgtcataattgtgtaaacatattcttgtcataacaaaaagatgagtggcagtcaaagtttaagaagtgg 48236212  T
Q  114 aaaaaggtaaacaaacgttgtcaatagcaatttgttcaaactccgctgcataacaatgttatagcgtgctgctactatttgacaacattttacactaaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236213 aaaaaggtaaacaaacgttgtcaatagcaatttgttcaaactccgctgcataacaatgttatagcgtgctgctactatttgacaacattttacactaaat 48236312  T
Q  214 agcatatcccgaaataacagcgatttgttcaaatttcgctatgttatagtgccatagcaccactataaccgttatatt 291  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236313 agcatatcccgaaataacagtgatttgttcaaatttcgctatgttatagtgccatagcaccactataaccgttatatt 48236390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 48236418 - 48236461
Alignment:
Q  300 gggaaaatttgcattattaaatggttaatatttagggtacaaag 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  48236418 gggaaaatttgcattattaaatggttaatatttagggtacaaag 48236461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 25252099 - 25252041
Alignment:
Q  189 tatttgacaacattttacactaaatagcatatcccgaaataacagcgatttgttcaaat 247  Q
    |||| |||||||||||  |||||||||| |||| ||||| || ||||||||||||||||    
T  25252099 tattagacaacattttgtactaaatagcgtatcacgaaacaagagcgatttgttcaaat 25252041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 43381236 - 43381176
Alignment:
Q  188 ctatttgacaacattttacactaaatagcatatcccgaaataacagcgatttgttcaaatt 248  Q
    |||||||||||||||||  | ||||| ||||||| || ||||| |||||||| ||||||||    
T  43381236 ctatttgacaacattttgtattaaattgcatatcgcggaataatagcgatttattcaaatt 43381176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 2732996 - 2732920
Alignment:
Q  188 ctatttgacaacattttacactaaatagcatatcccgaaataacagcgatttgttcaaatttcgctatgttatagtg 264  Q
    |||||||||||||||||  ||||||||||||||| | ||| || ||||||||||||||||||| ||| | |||||||    
T  2732996 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtg 2732920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 1110409 - 1110473
Alignment:
Q  188 ctatttgacaacattttacactaaatagcatatcccgaaataacagcgatttgttcaaatttcgc 252  Q
    ||||||||||||| ||   ||||||||||||||||||||| || ||| |||||||||||||||||    
T  1110409 ctatttgacaacacttagaactaaatagcatatcccgaaacaatagcaatttgttcaaatttcgc 1110473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 4432 - 4388
Alignment:
Q  207 actaaatagcatatcccgaaataacagcgatttgttcaaatttcg 251  Q
    ||||||||||||||||||||| || ||| ||||||||||||||||    
T  4432 actaaatagcatatcccgaaacaatagcaatttgttcaaatttcg 4388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 18737733 - 18737689
Alignment:
Q  207 actaaatagcatatcccgaaataacagcgatttgttcaaatttcg 251  Q
    ||||||||||||||||||||| || ||| ||||||||||||||||    
T  18737733 actaaatagcatatcccgaaacaatagcaatttgttcaaatttcg 18737689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 42843425 - 42843363
Alignment:
Q  187 actatttgacaacattttacactaaatagcatatcccgaaataacagcgatttgttcaaattt 249  Q
    |||||||||||||| |||| ||| |||||| ||||||| || || ||| ||||||||||||||    
T  42843425 actatttgacaacaatttatacttaatagcttatcccggaacaatagcaatttgttcaaattt 42843363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 18747591 - 18747547
Alignment:
Q  207 actaaatagcatatcccgaaataacagcgatttgttcaaatttcg 251  Q
    |||||||||||||||||||||  | ||| ||||||||||||||||    
T  18747591 actaaatagcatatcccgaaactatagcaatttgttcaaatttcg 18747547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 43283418 - 43283498
Alignment:
Q  191 tttgacaacattttacactaaatagcatatcccgaaataacagcgatttgttcaaatttcgctatgttatagtgccatagc 271  Q
    ||||||||||||||   | ||||||| |||  || || |||||||||||||||||||| ||||||| |||||||| |||||    
T  43283418 tttgacaacattttgtcccaaatagcgtattgcggaacaacagcgatttgttcaaattacgctatgctatagtgctatagc 43283498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 415206 - 415131
Alignment:
Q  187 actatttgacaacattttacactaaatagcatatcccgaaataacagcgatttgttcaaatttcgctatgttatag 262  Q
    ||||||| ||||||||||  ||||||||||| ||| ||||| || ||||| |||||||||||  |||||| |||||    
T  415206 actatttcacaacattttgtactaaatagcaaatcacgaaacaatagcgacttgttcaaattctgctatgctatag 415131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 6025970 - 6026031
Alignment:
Q  187 actatttgacaacattttacactaaatagcatatcccgaaataacagcgatttgttcaaatt 248  Q
    ||||||||||||||||||  ||||||||||||||| || || || | | |||||||||||||    
T  6025970 actatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaatt 6026031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 33651716 - 33651683
Alignment:
Q  187 actatttgacaacattttacactaaatagcatat 220  Q
    ||||||||||||||||||| ||||||||||||||    
T  33651716 actatttgacaacattttatactaaatagcatat 33651683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 44417858 - 44417797
Alignment:
Q  187 actatttgacaacattttacactaaatagcatatcccgaaataacagcgatttgttcaaatt 248  Q
    |||||||||||||| ||| ||||||||| |||||||| ||| || | || ||||||||||||    
T  44417858 actatttgacaacactttgcactaaataacatatcccaaaacaataacggtttgttcaaatt 44417797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 15592684 - 15592716
Alignment:
Q  188 ctatttgacaacattttacactaaatagcatat 220  Q
    ||||||||||||||||||||| |||||||||||    
T  15592684 ctatttgacaacattttacaccaaatagcatat 15592716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University