View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3512_high_10 (Length: 545)
Name: NF3512_high_10
Description: NF3512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3512_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 7 - 528
Target Start/End: Complemental strand, 51856097 - 51855567
Alignment:
| Q |
7 |
gtgagatgaacatgatgtgaggtggaccttgacgctgaggttttggacattacttgatgccgcttctagacaaaaacaggtttaattagttaatgtttga |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51856097 |
gtgagaagaacatgatgtgaggtggaccttgacgctgaggttttggacattacttgatgctgcttctagacaaaaacaggtttaattagttaatgtttga |
51855998 |
T |
|
| Q |
107 |
atttgatctagttaatgnnnnnnn-aaaatgtttgttcatgttgacttaactttatttgaatataaaatgttagaattatgttgttggagaatagctttt |
205 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
51855997 |
atttgatctagttaatgttttttttaaaatgtttgttcatgttgacttaactttacttgaatataaaatgttagaattatgttattggagaatagccttt |
51855898 |
T |
|
| Q |
206 |
ggccctaaggctggtaagggaagttcatctgccagatttatgta--------ctctttgtctgcagttcaaccaaattcttgttttaaatactattgaat |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
51855897 |
ggccctaaggctggtaagggaagttcatctgccagatttgtgtatttgtgtactctttgtctgcggttcaaccaaattcttgttttaaatactattgaat |
51855798 |
T |
|
| Q |
298 |
tctctatccaaacacactcttgtgctatgtgctttaaaagtccggattggttgtgtgagaatgaaatagttatccattataatacaattaaatgctacaa |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51855797 |
tctctatccaaacacactcttgtgctatgtgctttaaaagtccggattggttgtgtgagaatgaaatagttatccattataatacaattaaatgctacaa |
51855698 |
T |
|
| Q |
398 |
atttaagtaccaaattttaataacgtattgtttgttattttgaaaacttcttatatattggcattaacttgtgctagtttgcttcttcttcttgttgaga |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51855697 |
atttaagtaccaaattttaataacgtattgtttgttattttgaaaactttttatatattggcattaacttgtgctagtttgcttcttcttcttgttgaga |
51855598 |
T |
|
| Q |
498 |
cattgcttgaaagaaatcaacagtagtattt |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
51855597 |
cattgcttgaaagaaatcaacagtagtattt |
51855567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 206 - 527
Target Start/End: Original strand, 35042588 - 35042912
Alignment:
| Q |
206 |
ggccctaaggctggtaagggaagttcatctgccagatttatgta--------ctctttgtctgcagttcaaccaaattcttgttttaaatactattgaat |
297 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||| |||| ||||| |||||||||||||| |||||| |||||||||| |||| |||| |
|
|
| T |
35042588 |
ggccctaaggctggtaggagaagttcatctgccagatttgtgtatttgtgtactcttcgtctgcagttcaacaaaattcctgttttaaatgctatcgaat |
35042687 |
T |
|
| Q |
298 |
tctctatccaaacacactcttgtgctatgtgctttaaaagtccggattggttgtgtgagaatgaaatagttatccattataatacaattaaatgctacaa |
397 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||| || ||||| |||||||||||| |||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
35042688 |
tctcgatccaaacag--tcttgtgctatgtgctttaaaagttcgaattggctgtgtgagaatggaatagttatccattataatacagttaaaggctacaa |
35042785 |
T |
|
| Q |
398 |
atttaagtaccaaattttaataacgtattgtttgttattttgaaaacttcttatatattggcattaacttgtgctagtttgcttcttcttcttgttgaga |
497 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| || |||||||||| ||||| |
|
|
| T |
35042786 |
atttaagtaccaaagtttaataatgtattgtttgttattttgaatacttcttatagattggcattaacttgtgctagagtg---cttcttcttgctgaga |
35042882 |
T |
|
| Q |
498 |
cattgcttgaaagaaatcaacagtagtatt |
527 |
Q |
| |
|
||||||||||||||||||| |||||||||| |
|
|
| T |
35042883 |
cattgcttgaaagaaatcagcagtagtatt |
35042912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 7 - 528
Target Start/End: Complemental strand, 8945283 - 8944754
Alignment:
| Q |
7 |
gtgagatgaacatgatgtgaggtggaccttgacgctgaggttttggacattacttgatgccgcttctagacaaaaacaggtttaattagttaatgtttga |
106 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8945283 |
gtgagaagaacataatgtgaggttgaccttgacgctgaggttttggacattacttgatgctgcttctagacaaaaacaggtttaattagttaatgtttga |
8945184 |
T |
|
| Q |
107 |
atttgatctagttaatgnnnnnnnaaaatgtttgttcatgttgacttaactttatttgaatataaaatgttagaattatgttgttggagaatagcttttg |
206 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
8945183 |
atttgatctagttaatgtttttttaaaatgtttgttcatgttgacttaactttacttgaatataaaatgttagaattatgttattggagaatagcctttg |
8945084 |
T |
|
| Q |
207 |
gccctaaggctggtaagggaagttcatctgccagatttatgta--------ctctttgtctgcagttcaaccaaattcttgttttaaatactattgaatt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8945083 |
cccctaaggctggtaagggaagttcatctgccagatttgtgtatttgtgtactctttgtctgcagttcaaccaaattcttgttttaaatactattgaatt |
8944984 |
T |
|
| Q |
299 |
ctctatccaaacacactcttgtgctatgtgctttaaaagtccggattggttgtgtgagaatgaaatagttatccattataatacaattaaatgctacaaa |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
8944983 |
ctctatccaaacacactcttgtgctatgtgctttaaaagtccggattggttgtgtgagaatgaaatggttatccattataatacagttaaatgctacaaa |
8944884 |
T |
|
| Q |
399 |
tttaagtaccaaattttaataacgtattgtttgttattttgaaaacttcttatatattggcattaacttgtgctagtttgcttcttcttcttgttgagac |
498 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8944883 |
tttaagtaccaaattttaataacatattgtttgttattttgaaaacttcttatatattggcattaacttgtgctagtttgcttcttcttcttgttgagac |
8944784 |
T |
|
| Q |
499 |
attgcttgaaagaaatcaacagtagtattt |
528 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
|
|
| T |
8944783 |
attggttgaaagaaatcaacagtagtattt |
8944754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 24269889 - 24269829
Alignment:
| Q |
28 |
gtggaccttgacgctgaggttttggacattacttgatgccgcttctagacaaaaacaggttt |
89 |
Q |
| |
|
||||||| ||| ||||||||||||||||| ||||||| | ||||||||||| |||||||||| |
|
|
| T |
24269889 |
gtggaccctgatgctgaggttttggacat-acttgatactgcttctagacagaaacaggttt |
24269829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University