View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3512_high_13 (Length: 434)
Name: NF3512_high_13
Description: NF3512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3512_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 125 - 417
Target Start/End: Complemental strand, 2963774 - 2963487
Alignment:
| Q |
125 |
atgatgtcattatatcacacgtttttataaaattatattaataaaaatattcaaatagttacaaatgattaataattgcattgtttttgttggatgaata |
224 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |
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| T |
2963774 |
atgatgtcattatatcacaagtttttataaaattatattaataaaaatattcaaatagttacaaatgattaatgattgcattgtttttgattgatgaata |
2963675 |
T |
|
| Q |
225 |
aaaacttaaaattaaaataatgatgcatcttttaaaaagcaatgagggtaaggtcgaaaacgagtcgagtcgagttgaatcttgttcagttcggttcgac |
324 |
Q |
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|||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
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| T |
2963674 |
aaaaattaaaattaaaataatgctgcatctattaaaaagcaatgagggtaaggtcggaaacgagtcgagtc-----gaatcttgttcagttcgactcgac |
2963580 |
T |
|
| Q |
325 |
ttgataagaattagatcgactcaaaacttaaattcgttaaaaacnnnnnnnnctagttcgaattcgactcaattcaaactcatgaaccgttca |
417 |
Q |
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| T |
2963579 |
ttgataagaattagatcgactcaaaacttaaattcgttaaaaactttttttattagttcaaattcgactcaattcaaactcatgaaccgttca |
2963487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 125 - 355
Target Start/End: Complemental strand, 2972146 - 2971922
Alignment:
| Q |
125 |
atgatgtcattatatcacacgtttttataaaattatattaataaaaatattcaaatagttacaaatgattaataattgcattgtttttgttggatgaata |
224 |
Q |
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||||| ||||||| ||||| ||||||||||||||| || |||||||||||||||||||| ||||||||||| |||| ||||||||| |||||| ||| |
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| T |
2972146 |
atgatatcattatttcacaattttttataaaattatttttgtaaaaatattcaaatagttataaatgattaatgattgtattgttttttatggatggata |
2972047 |
T |
|
| Q |
225 |
aaaacttaaaattaaaataatgatgcatcttttaaaaagcaatgagggtaaggtcgaaaacgagtcgagtcgagttgaatcttgttcagttcggttcgac |
324 |
Q |
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| T |
2972046 |
aaaa-atataaataaaataatgctgcatcttttaaaaagcattgagggtagggtcggaaatgagtcgagtcgag-----ccttgtttagttcggctcgac |
2971953 |
T |
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| Q |
325 |
ttgataagaattagatcgactcaaaacttaa |
355 |
Q |
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||||||||| ||| ||||||| |||||||| |
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| T |
2971952 |
ttgataagatttaaatcgacttgaaacttaa |
2971922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 2963880 - 2963832
Alignment:
| Q |
19 |
gtcttttggaactccctcgtgtccttattatatgaagattttcaaaatg |
67 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
2963880 |
gtcttttggaactccctcgtgtccttattatatgaatactttcaaaatg |
2963832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 2972362 - 2972328
Alignment:
| Q |
33 |
cctcgtgtccttattatatgaagattttcaaaatg |
67 |
Q |
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||||||||||||||||||| ||||||||||||||| |
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| T |
2972362 |
cctcgtgtccttattatataaagattttcaaaatg |
2972328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 64
Target Start/End: Complemental strand, 3338563 - 3338532
Alignment:
| Q |
33 |
cctcgtgtccttattatatgaagattttcaaa |
64 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3338563 |
cctcgtgtccttattatatgaagattttcaaa |
3338532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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