View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3512_high_4 (Length: 775)
Name: NF3512_high_4
Description: NF3512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3512_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 683; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 19 - 764
Target Start/End: Complemental strand, 16277758 - 16277023
Alignment:
| Q |
19 |
cattttgaccgctatagtttaaagttattgtttctcatgtagctaaacaatcacaaacaatctcagttgttgtttgtataagcaggtcaaactactatgc |
118 |
Q |
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| T |
16277758 |
cattttgaccgctatagtttaaagttattgtttctcatgtagctaaacaatcgcaaacaatctcagttgttgtttgtataagcaggtcaaactactatgc |
16277659 |
T |
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| Q |
119 |
cttaagtgtttcaaaacagaattgaaagactacaaacctgtgccttattatacaacaatcaagtaggttcttgtgatttctcttcattattttgaacaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16277658 |
cttaagtgtttcaaaacagaattgaaagactacaaacctgtgccttattatacaacaatcaagtaggttcttgtgatttctcttcattattttgaacaaa |
16277559 |
T |
|
| Q |
219 |
atcttccgtcctagtaaagagacaatattattttaatttgaatgaaatgaaatgagcggactattcatctaaagtggtctatttgcaataaggtcacaaa |
318 |
Q |
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| T |
16277558 |
atcttccgtcctagtaaagagacaatattattttaatttgaatgaaatgaaatgagaggactattcatctaaagtggtctatttgcaataaggtcacaaa |
16277459 |
T |
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| Q |
319 |
gctgtgacattataaagatgcttacgtgtgtatttccctcatcgaaaaactatgaatttctcatcaggtatgttttctttcatatctctcatcatgaatt |
418 |
Q |
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| T |
16277458 |
gctgtgacattataaagatgcttacgcgtgtatttccctcatcgaaaaactatgaatttctcatcaggtatgttttctttcatatctctcatcatga--- |
16277362 |
T |
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| Q |
419 |
ggtatgaattgtaggaacaaaatattggtttgtaaagactattatagaatatgtttcttgtcttattcaatttcagtttaaaaatctatatcttttggtt |
518 |
Q |
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| T |
16277361 |
-------attgtaggaacaaaatattggtttataaagactattatagaatctgtttcttgtcttattcaatttcagtttaaaaatctatatcttttggtt |
16277269 |
T |
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| Q |
519 |
ttgctttggaatttggttaaaaacatgttgaatatggcataaaatacaaccaaaatcaacgggcttgactttaactaccaaccaagaaaagacatgtctt |
618 |
Q |
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| T |
16277268 |
ttgctttggaatttggttaaaaacatgttgaatatggcataaaatacaaccaaaatcaacgggcttgaccttaactaccaaccaagaaaagacatgtctt |
16277169 |
T |
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| Q |
619 |
gtctccaacagagtatattattttctttctatattgaataagcctgtatattcagacagatatttgtgaaagagttaaattaattaattttacctaatat |
718 |
Q |
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| T |
16277168 |
gtctccaacagagtatattattttctttctatattgaataagcctgtatattcagacatatatttgtgaaagagttaaattaattaattttacctaatat |
16277069 |
T |
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| Q |
719 |
cttctatcttcatatctctttttcttggataaacgtctatcttcat |
764 |
Q |
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| T |
16277068 |
cttctatcttcatatctctttttcttggataaacgtctatcttcat |
16277023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 16336242 - 16336390
Alignment:
| Q |
19 |
cattttgaccgctatagtttaaagttattgtttctcatgtagctaaacaatcacaaacaatctcagttgttgtttgtataagcaggtcaaactactatgc |
118 |
Q |
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||||||||| ||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
16336242 |
cattttgactgctatagttaaaagttattgtttctcatatacctaaacaatcacaaacaatctcagttgttgtttgtataagcaggtcaaattactacgc |
16336341 |
T |
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| Q |
119 |
cttaagtg-tttcaaaacagaattgaaagactacaaacctgtgccttat |
166 |
Q |
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|||||| | | | |||||||||||||||||||||||||||||||||||| |
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| T |
16336342 |
cttaagggatattaaaacagaattgaaagactacaaacctgtgccttat |
16336390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 16339161 - 16339013
Alignment:
| Q |
19 |
cattttgaccgctatagtttaaagttattgtttctcatgtagctaaacaatcacaaacaatctcagttgttgtttgtataagcaggtcaaactactatgc |
118 |
Q |
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||||||||| | ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |
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| T |
16339161 |
cattttgactgatatagttaaaagttattgtttctcatatagctaaacaatcacaaacaatctcagttgttgtttgtataagcatgtcaaaatactacgc |
16339062 |
T |
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| Q |
119 |
cttaagtg-tttcaaaacagaattgaaagactacaaacctgtgccttat |
166 |
Q |
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|||||| | | | |||||||||||||||||||||||| ||||||||||| |
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| T |
16339061 |
cttaagggatattaaaacagaattgaaagactacaaatctgtgccttat |
16339013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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