View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3512_high_5 (Length: 725)
Name: NF3512_high_5
Description: NF3512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3512_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 1 - 706
Target Start/End: Complemental strand, 37999475 - 37998771
Alignment:
| Q |
1 |
tccaaattaagcaatttatttgatttagaaaaaa-ttctaaaacaagataagatagtatttgaccttttatgttgtaatcaaattcaatgtctttgactt |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37999475 |
tccaaattaagcaatttatttgatttagaaaaaaattctaaaacaagataagatagtatttgaccttttatgttgtaatcaaattcaatgtctttgactt |
37999376 |
T |
|
| Q |
100 |
gacccctcattcattaacattgctcccacatatttttagtcctaataattgtgtttaacattgctccgacaacaaaatattttgggacactttctgcacg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37999375 |
gacccctcattcattaacattgctcccacatatttttagtcctaataattatgtttaacattgctccgacaacaaaatattttgggacactttctgcacg |
37999276 |
T |
|
| Q |
200 |
agttttccaacacgtgtagaacaagtgtcacatgagtgtctgatatgcgacaggcctgatattaaaaggtgtttgtgcttcatagttatctacttctagt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37999275 |
agttttccaacacgtgtagaacaagtgtcacatgagtgtctgatatgcgacaggcctgatattaaaaggtgtttgtgcttcatagttatctacttctagt |
37999176 |
T |
|
| Q |
300 |
gttaccttgattttgcatctgactagggatagcagtgagactgtattattccttaaatttgtattaaagaggagaatctttaatgattcatcacctccta |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37999175 |
gttaccttgattttgcatctgactagggatagcagtgagactgtattattccttaaatttgtattaaagaggagaatcttcaatgattcatcacctccta |
37999076 |
T |
|
| Q |
400 |
gttttcttgctacacatattttttcctcttttaagaatgtttgtgaccttgtggtgcatgtgcttgtttcctgttcacnnnnnnnctttccaattgatca |
499 |
Q |
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| T |
37999075 |
gttttgttgctacacatattttttcctc-tttaagaatgtttgtgaccttgtggtgcatgtgcttgtttcctgttcactttttttctttccaattgatca |
37998977 |
T |
|
| Q |
500 |
agcatgtgctttttaatccggctagcaaaatttatatacatgactgatttatcctttgaaaggataaatatagaactgtgtagtaccaacattacttatt |
599 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37998976 |
agcatgtgctttttaatccggctagcaaaaattatatacatgactgatttatcctttgaaaggataaatatagaact-tgtagtaccaacattacttatt |
37998878 |
T |
|
| Q |
600 |
aaaagtgtgatgactgtcctgtagattacataaaattacttcaattctttacaaattattattggtgtcgatgtatcagtacgtacccggccggtgtctg |
699 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37998877 |
aaaagtgtgatgactgtcctgtagattacataaaattacttcaattctttagaaattattattggtgtcgatgtatcagttcgtacccggccggtgtctg |
37998778 |
T |
|
| Q |
700 |
tactttt |
706 |
Q |
| |
|
||||||| |
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|
| T |
37998777 |
tactttt |
37998771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 44650109 - 44650046
Alignment:
| Q |
4 |
aaattaagcaatttatttgatttagaaaaaattctaaaacaagataagatagtatttgaccttt |
67 |
Q |
| |
|
||||| |||||||||||| ||| | |||||||| |||||||||||| |||| ||||||||||| |
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|
| T |
44650109 |
aaattgagcaatttatttcattgaaaaaaaattataaaacaagataccatagaatttgaccttt |
44650046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 4748215 - 4748159
Alignment:
| Q |
10 |
agcaatttatttgatttagaaaaaattctaaaacaagataagatagtatttgaccttt |
67 |
Q |
| |
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|||||||||||| ||| |||||| |||||||||||| || ||||||||||||||||| |
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|
| T |
4748215 |
agcaatttatttcattg-gaaaaagttctaaaacaagttacgatagtatttgaccttt |
4748159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 9929658 - 9929714
Alignment:
| Q |
10 |
agcaatttatttgatttagaaaaaattctaaaacaagataagatagtatttgaccttt |
67 |
Q |
| |
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|||||||||||| ||| ||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
9929658 |
agcaatttatttcatt-agaaaaagttctacaacaagatatcatagtatttgaccttt |
9929714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 16661312 - 16661256
Alignment:
| Q |
10 |
agcaatttatttgatttagaaaaaattctaaaacaagataagatagtatttgaccttt |
67 |
Q |
| |
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|||||||||||| ||| | ||||| ||||||||||||||| |||||||||| |||||| |
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| T |
16661312 |
agcaatttattttattaa-aaaaagttctaaaacaagataggatagtatttaaccttt |
16661256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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