View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3512_high_8 (Length: 577)
Name: NF3512_high_8
Description: NF3512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3512_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 14 - 562
Target Start/End: Complemental strand, 10651373 - 10650824
Alignment:
| Q |
14 |
agaaaagtgaaggtaaatactgaagtaagataaaacataaaatgaaagtaaatttattaaaagatgaaaataatatagtttattcctaagtttgaagtat |
113 |
Q |
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| T |
10651373 |
agaaaagtgaaggtaaatactgaagtaagataaaacacaaaatgaaagtaaatttattaaaagatgaaaataatatagtttattcctaagtttgaagtat |
10651274 |
T |
|
| Q |
114 |
gcaattgtttttcttaaatataagttagaatgtttagaagatagtaatgcaattatagagcaagataagagaaaaatataaacctttcatgtaagcaaca |
213 |
Q |
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| T |
10651273 |
gcaactgtttttcttaaatataacttagaatgtttagaagatagtaatgcaattatagagcaagataagagaaaaatataaacctttcatgtaagcaaca |
10651174 |
T |
|
| Q |
214 |
gaattcctaactcttctttcacatccatcacagtccattttcaccttaatttcaaccgtctgcaagagaaatatacaaataatatcaaaatcatgttatg |
313 |
Q |
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| T |
10651173 |
gaattcctaactcttctttcacatccatcacagtccattttcaccttgatttcaaccgtctgcaagagaaatatacaaataatatcaaaatcatgttatg |
10651074 |
T |
|
| Q |
314 |
ttataaacaaagaggaatgaacaaaatttggata---taggtaagactaagaactgatgaaaacctgcattggcttgtgnnnnnnnccagttgatgagta |
410 |
Q |
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| T |
10651073 |
ttacaaacaaagaggaatgaacaaaatttggataggtaaggtaagactaagaactgatgaaaacctgcattggtttgtgtttttttccagttgatgagta |
10650974 |
T |
|
| Q |
411 |
ttcagggaaataatcagatagtttatcaagaacacccannnnnnnnnnnnnnnnncaagcaaagaaacagaacagaataacttggtttgtgtgtgtgaca |
510 |
Q |
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| T |
10650973 |
ttcagggaaataatcagatagtttatcaagaacaccca--ttttttctctcttttcaagcaaagaaacagaacagaatatctttatttgtgtgtgtgaca |
10650876 |
T |
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| Q |
511 |
gagagaaagggaaaaagggctttatttaggacaaaaatatttgggtacaaaa |
562 |
Q |
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| T |
10650875 |
gagagaaagggcaaaaggggtttatttagtacaaaaatattggggtacaaaa |
10650824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 10195943 - 10196017
Alignment:
| Q |
210 |
aacagaattcctaactcttctttcacatccatcacagtccattttcaccttaatttcaaccgtctgcaagagaaa |
284 |
Q |
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| T |
10195943 |
aacagaattccgaactcttctttcacagccatcacagtccattttcacctttatttcaactgtctataagagaaa |
10196017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 54328 - 54276
Alignment:
| Q |
223 |
actcttctttcacatccatcacagtccattttcaccttaatttcaaccgtctg |
275 |
Q |
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|||||||||||||| ||||||||||||||| |||| || || ||||||||||| |
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| T |
54328 |
actcttctttcacaaccatcacagtccattctcacttttatctcaaccgtctg |
54276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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