View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3512_low_11 (Length: 500)
Name: NF3512_low_11
Description: NF3512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3512_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 15842869 - 15842396
Alignment:
| Q |
18 |
atatgaactatgatcaatttggaatacttataaaagtcaaattcaggtgatggtttttctgaaccagttattttgttcattctgtttataagaatgttct |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15842869 |
atatgaactatgatcaatttggaatacttataaaagtcaaattcaggtgatggtttttctgaaccagttattttgttcattctgtttataagaatgttct |
15842770 |
T |
|
| Q |
118 |
ttcaagtggtcactgttcattcttgttattggttgttgtaacttctggttagtagtcaactttattgttaagaaggaaacacagcctacaacgattacat |
217 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15842769 |
ttcaagtggtcgctgttcattcttgttattggttgttgtaacttctggttagtagtcaactttattgttaagaaggaaacccagcctacaacgattacat |
15842670 |
T |
|
| Q |
218 |
atttgttgatataagtcagaatattatgattaatgaaatctgcacttttaaattatgaaaggccgcagaagatgagggaatggccacactgggctacgac |
317 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
15842669 |
atttgttgatataagtcagaatgttatgattaatgaaatctgcagttttaaattatgaaaggccgcagaaggtgagggaatggccacactgggctacaac |
15842570 |
T |
|
| Q |
318 |
tagctagggtgggactaaggctcacagcttcactatgatcttgctataatggctgcattagacagtggaaaacgccgctatgaaacagcggaatgaggcg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15842569 |
tagctagggtgggactaaggctcacagcttcactatgatcttgctataatggctgcattagacagtggaaaacgccgctatgaaacagcggaatgaggcg |
15842470 |
T |
|
| Q |
418 |
tagacagggtgctgctgtacctggagtgaccaaagttccttcttctatatctgtgtctgttatcactatctctg |
491 |
Q |
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| T |
15842469 |
tagacagggtgctgctgtacctgtagtgaccaaagttccttcttctatatctgtgtctgttatcactatttctg |
15842396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 28 - 491
Target Start/End: Complemental strand, 15822889 - 15822440
Alignment:
| Q |
28 |
tgatcaatttggaatacttataaaagtcaaattcaggtgatggtttttctgaaccagttattttgttcattctgtttataagaatgttctttcaagtggt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||| |||| ||||||| |
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| T |
15822889 |
tgatcaatttggaatacttataaaagtcaaattcaggtgagtgttattctgaaccagttattttgtttattctgtttctaagaatgtacttttaagtggt |
15822790 |
T |
|
| Q |
128 |
cactgttcattcttgttattggttgttgtaacttctggttagtagtcaactttattgttaagaaggaaacacagcctacaacgattacatatttgttgat |
227 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | ||||| | |||||| |||||||| |
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| T |
15822789 |
tactgttcattcttattattggttgttgtaacttctggttagtagtcaacttcattgttaagagggaaaccccgcctaagcc---tacatagttgttgat |
15822693 |
T |
|
| Q |
228 |
ataagtcagaatattatgattaatgaaatctgcacttttaaattatgaaaggccgcagaagatgagggaatggccacactgggctacgactagctagggt |
327 |
Q |
| |
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|| |||| || |||||||||||||| |||| |||||| ||||| |||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
15822692 |
atcagtctgactattatgattaatgtaatcg-----------ttatgagaggccacagatggcgagggaatggccacactgggctacgactagctagggt |
15822604 |
T |
|
| Q |
328 |
gggactaaggctcacagcttcactatgatcttgctataatggctgcattagacagtggaaaacgccgctatgaaacagcggaatgaggcgtagacagggt |
427 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| || ||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
15822603 |
gggactaaggatcacagcatcactatgatctcgcaatattggctgcattagactgtggaaaacgctgctctgaaacagcggaatgaggcgtagacagggt |
15822504 |
T |
|
| Q |
428 |
gctgctgtacctggagtgaccaaagttccttcttctatatctgtgtctgttatcactatctctg |
491 |
Q |
| |
|
||||||||||||| |||| |||||| ||||||| || |||||| ||||| ||| |||| |||| |
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| T |
15822503 |
gctgctgtacctgcagtggtcaaagtcccttcttttaaatctgtctctgtcatctctatttctg |
15822440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 15828252 - 15828000
Alignment:
| Q |
18 |
atatgaactatgatcaatttggaatacttataaaagtcaaattcaggtgatggtttttctgaaccagttattttgttcattctgtttataagaatgttct |
117 |
Q |
| |
|
||||| ||| ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| ||||||| || |
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| T |
15828252 |
atatggactttgatcaatttggaatacttgtaaaagtcaaattcaggtgagggttgttctgaaccagttattttgtttattctgttcataagaacacgct |
15828153 |
T |
|
| Q |
118 |
ttcaagtggtcactgttcattcttgttattggttgttgtaacttctggttagtagtcaactttattgttaagaaggaaacacagcctacaacgattacat |
217 |
Q |
| |
|
| | | |||||||||||||||||| || ||||||| |||||||||||||||| ||||||||| | |||||||| |||||| | |||||||||||||||| |
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| T |
15828152 |
tacgaatggtcactgttcattcttatttttggttgatgtaacttctggttagcagtcaacttcaatgttaagagggaaaccaaacctacaacgattacat |
15828053 |
T |
|
| Q |
218 |
atttgttgatataagtcagaatattatgattaatgaaatctgcacttttaaat |
270 |
Q |
| |
|
| || ||||| | ||||||| | |||||||||||| ||||||||||||||||| |
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|
| T |
15828052 |
agtttttgatttcagtcagactgttatgattaatgtaatctgcacttttaaat |
15828000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 47446750 - 47446940
Alignment:
| Q |
18 |
atatgaactatgatcaatttggaatacttataaaagtcaaattcaggtgatggtttttctgaaccagttattttgttcattctgtttataagaatgttct |
117 |
Q |
| |
|
||||| ||| |||||||| |||||||| |||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||| ||||||||| || |
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|
| T |
47446750 |
atatggactttgatcaatatggaatacatataaaagtcaaattcaggtgacagttgttctgaacaagttattttgtttattctgtttttaagaatgtgct |
47446849 |
T |
|
| Q |
118 |
ttcaagtggtcactgttcattcttgttattggttgttgtaacttctggttagtagtcaactttattgttaagaaggaaacacagcctacaa |
208 |
Q |
| |
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|||| || ||| ||||||| | ||||| |||| ||||||||||||||| ||||| ||| | |||| ||| |||||| || ||||||| |
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| T |
47446850 |
ttcacagggccacctttcattcatattattagttgatgtaacttctggttaccagtcagcttcaatgtttagagggaaacccaacctacaa |
47446940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 10705836 - 10705931
Alignment:
| Q |
18 |
atatgaactatgatcaatttggaatacttataaaagtcaaattcaggtgatggtttttctgaaccagttattttgttcattctgtttataagaatg |
113 |
Q |
| |
|
||||| ||| ||||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| |||||||| |
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| T |
10705836 |
atatggactttgatcaattcggaatacatataaaagtcaaattcaggtgggagttgttctgaaccagttattttgtttattctgtttttaagaatg |
10705931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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