View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3512_low_12 (Length: 464)
Name: NF3512_low_12
Description: NF3512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3512_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 36 - 454
Target Start/End: Original strand, 7781641 - 7782059
Alignment:
| Q |
36 |
gaaattgatacacatctatgatgctcaaacctcaagatcctaaatactggagaatcgaatagtcagaagtagaatctatgacaaataatagctaaaagca |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
7781641 |
gaaattgatacacatctatgatgctcaaacctcaagatcctaaatacttgagaatctaatagtcagaagtagaatgcatgacaaataacagctaaaagca |
7781740 |
T |
|
| Q |
136 |
aatcaaataagcaacatactgcaaatggaaaaagacatcattacccagtttatggaactttttcagcgaaatctttttgcacttcaagaaagaccagtcg |
235 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
7781741 |
aatgaaataagtaacatactgcaaatggaaaaagacatcattacccagtttatggaactttttcagcgaaatcttttttcacttcaagaaagatcagtcg |
7781840 |
T |
|
| Q |
236 |
aatagtttgaagaataataccaagtagactaaatcaagttccatttgctggatactaaaagcaaaggtgctttgaattaaacaaacttacttcaattaaa |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7781841 |
aatagtttgaagaataataccaagtagactaaatcaagttccatttgctggatactaaaagcaaaggtgctttgaattaaacaaactcacttcaattaaa |
7781940 |
T |
|
| Q |
336 |
cttgaaactcaaattcgatatatatcttattactttatagtttttccaagcgcagaaagttacagctgagtggatagtatcctccaaactcatgaagtca |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7781941 |
cttgaaactcaaattcgatatatatcttattaccttatagtttttccaaacgcagaaagttacagctgagtggatagtaacctccaaactcatgaagtca |
7782040 |
T |
|
| Q |
436 |
atcaccattcttctgatga |
454 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
7782041 |
atcaccattcttcttatga |
7782059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University