View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3512_low_17 (Length: 237)
Name: NF3512_low_17
Description: NF3512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3512_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 43393183 - 43393384
Alignment:
| Q |
17 |
caaaggaatcaagctaaaacagatttatatcatcatgcgttggtgaaaatcaatgaatacagaagctgagtaaaaacctttcagcatcagaagacatgga |
116 |
Q |
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| T |
43393183 |
caaaggaatcaagctaaaacagatttatatcatcatgtgttggtgaaaatcaatgaatacagaagctgagtaaaaacctttcagcatcagaagacatg-a |
43393281 |
T |
|
| Q |
117 |
aaaggctaactggacaaaatcaaatcccagggcatacataagggcacaagaaaaaacttttaagataaaatttaaaacttttaagatattgaatgcaaca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43393282 |
aaaggctaactggacaaaatcaaatcccagggcatacataagggcacaagaaaaaacttttaagataaaattttaaacttttaagatattgaatgcaaca |
43393381 |
T |
|
| Q |
217 |
ttt |
219 |
Q |
| |
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||| |
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| T |
43393382 |
ttt |
43393384 |
T |
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