View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3512_low_2 (Length: 829)
Name: NF3512_low_2
Description: NF3512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3512_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 527; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 156 - 710
Target Start/End: Complemental strand, 17141243 - 17140689
Alignment:
| Q |
156 |
aaagtattactaatgtctctgtgtaagtattgtgtttgatatccgtatttgtatcggttttccatagctcaagagagtcaatgatgacaaaggaaaagat |
255 |
Q |
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| T |
17141243 |
aaagtattactaatgtctctgtgtaagtattgtgtttgatatctgtatttgtatcggttttcaatagctcaagagagccaatgatgacaaaggaaaagat |
17141144 |
T |
|
| Q |
256 |
gacacatattggatttttctttatgaatgtttaataatagtaaagaaagatcacgaagtaggccacttaaatcttgagtatggaatctttaggtatagtc |
355 |
Q |
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| T |
17141143 |
gacacatattggatttttctttatgaatgtttaataatagtaaagaaagatcacgaagtaggccacttaaatcttgagtatggaatctttaggtatagtc |
17141044 |
T |
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| Q |
356 |
gtagtctttggctaatagggctgtttttgaggttttccaaatttctttatgagatttccatcacatatacttgaagtggaagatcaaactatttattatc |
455 |
Q |
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| T |
17141043 |
gtagtctttggctaatagggctgtttttgaggttttccaaatttctttatgagatttccatcacatatacttgaagtggaagatcaaactatttattatc |
17140944 |
T |
|
| Q |
456 |
tttttgcaaatttgtattctttatcatgatgattgaagcaaagcatagtattttagctggaaatgtccatgacatgacaaggacagtccttgttaaatat |
555 |
Q |
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| T |
17140943 |
tttttgcaaatttgtattctttatcatgatgattgaagcaaagcatagtattttagctggaaatgtccatgacatgacaaggacagtccttgttaaatat |
17140844 |
T |
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| Q |
556 |
gttcgtttgactagcaataaaccacacaatgttacaacacttaatagttattaatcggggaaaatatatgaagatgataagataaatgtaagtttggtta |
655 |
Q |
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| T |
17140843 |
gttcgtttgactagcaataaaccacacaatgttacaacacttactagttattaatcggggaaaatatatgaagatgataagataaatgcaagtttggttc |
17140744 |
T |
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| Q |
656 |
tgaggtgataataattaattttgagtgaatatattctataaaattgattttggat |
710 |
Q |
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| T |
17140743 |
tgaggtgataataattaattttgagtgaatagattctataaaattgattttggat |
17140689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 17141424 - 17141334
Alignment:
| Q |
13 |
cacagacaactcagatcaaaggtgtgtttgatatttgacatatgttaatgtcaaataccaacataacattgacaccgacacaaactcatgt |
103 |
Q |
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| T |
17141424 |
cacaaacaactcagatcaaagatgtgtttgatatttgacatatgttaatatcaaataccaacataacattgacaccgacacaaactcatgt |
17141334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 709 - 812
Target Start/End: Complemental strand, 17140600 - 17140494
Alignment:
| Q |
709 |
atgcatattggtgagccttggtgtcatcattgtgtcaataatttggaggatgttttgcaag---ttctgtgtgattgttcgctagcaaaaagcatttggt |
805 |
Q |
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| T |
17140600 |
atgcatattggtgtaccttggtgtcatcattgtgtcaataatttggaggatgttttgcaagtacttctgcatgattgttcgctagcgaaaagcatttggt |
17140501 |
T |
|
| Q |
806 |
gcaattt |
812 |
Q |
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| T |
17140500 |
gcaattt |
17140494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 707
Target Start/End: Original strand, 37745785 - 37745850
Alignment:
| Q |
642 |
tgtaagtttggttatgaggtgataataattaattttgagtgaatatattctataaaattgattttg |
707 |
Q |
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| T |
37745785 |
tgtatgtttggttttgcggtgataataattgattttgagtgaattgattatgtaaaattgattttg |
37745850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 707
Target Start/End: Original strand, 11759746 - 11759811
Alignment:
| Q |
642 |
tgtaagtttggttatgaggtgataataattaattttgagtgaatatattctataaaattgattttg |
707 |
Q |
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| T |
11759746 |
tgtatgtttggttatgaggtgaaaaaaattgagtttgagtgaattgattttgtaaaattgattttg |
11759811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 709 - 767
Target Start/End: Complemental strand, 8161604 - 8161546
Alignment:
| Q |
709 |
atgcatattggtgagccttggtgtcatcattgtgtcaataatttggaggatgttttgca |
767 |
Q |
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| T |
8161604 |
atgcatattggtgagcctttgtgtcaccattgtgtcgataatgtggaggatgttttgca |
8161546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 753 - 812
Target Start/End: Complemental strand, 39828263 - 39828204
Alignment:
| Q |
753 |
ggaggatgttttgcaagttctgtgtgattgttcgctagcaaaaagcatttggtgcaattt |
812 |
Q |
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| T |
39828263 |
ggaggatgttttgcatgttttacgtgattgttcgctagcgaaaagcgtttggtgtaattt |
39828204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 710
Target Start/End: Original strand, 13102477 - 13102537
Alignment:
| Q |
649 |
ttggttatgaggtgataataattaattttgagtgaatatattctataaaattgattttggat |
710 |
Q |
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| T |
13102477 |
ttggttatgcggtgataataattaattttgagtg-attgattatataaaattgatttaggat |
13102537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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