View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3512_low_3 (Length: 824)
Name: NF3512_low_3
Description: NF3512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3512_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 726; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 1 - 818
Target Start/End: Complemental strand, 43393180 - 43392370
Alignment:
| Q |
1 |
ttgaatttatgatcgctggctttaaaattgatttcttttttctcaatacggtttttatgtgaatcagggcgcaagttgtgggatggcctccaatccgatc |
100 |
Q |
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| T |
43393180 |
ttgaatttatgatcgctggctttaaaattgatttcttttttctcaatactgtttttatgtgaatcagggcgcaagttgtgggatggcctccaatccgatc |
43393081 |
T |
|
| Q |
101 |
tttcaggaagaactcaatggtttcacagcctcaaaagaatgatgctgatgcagaagccaaatctgaatgtctatatgtaaaagtcagcatggaaggtgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
43393080 |
tttcaggaagaactcaatggtttcacagcctcaaaagaatgatgctgatgcagaagccaagtctgaatgcctatatgtaaaagtcagcatggaaggtgct |
43392981 |
T |
|
| Q |
201 |
ccatacttgaggaaagtggatctgaatggttttagctcttatagggaactttcttcagcactcgaaaagatgttcagttgttttacaatcagtgagtttt |
300 |
Q |
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| T |
43392980 |
ccatacttgaggaaagtggatctgaatggttttagctcttatagggagctttcttcagcactcgaaaagatgttcagttgttttacaatcagtgagtttt |
43392881 |
T |
|
| Q |
301 |
tatctgcttgttatcgtcttctcaaattctctgtgtgtcttgatgttttatccgaggcatgatctataatgtcgcggtgatgtgatagtgatcatttttg |
400 |
Q |
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| T |
43392880 |
tatctgcttgttatcgtcttctcaaattctctgtgtgtcttgatgttttctccgaggcatgatcacaaatgtcttggtgatgtgatagtgatcatttttg |
43392781 |
T |
|
| Q |
401 |
taaatgtatagtactttgaagaacattttagttaaattagcaaaaatatttgaaaatcacaaggtcaagctagttgtaaatacaaggtgtgttttgaatg |
500 |
Q |
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| T |
43392780 |
taaatgtattgtactttgaagaacattttagttaaattagcaaaaatatttgaaaatcacaaggtcaagctagttgtaaatacgaggtgtgttttgaatg |
43392681 |
T |
|
| Q |
501 |
gctcaataaattctttactagaaaaagttctttatataa-ttaattgcatatgaaaaagaaaacataatgaaacagatgttaaactcaaatagttagctc |
599 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43392680 |
gctcaataaattctttactagaaaaagttctttatataatttaattgcatatgaaaaagaaaacgtaatgaaacagatgttaaactcaaatagttagctc |
43392581 |
T |
|
| Q |
600 |
agacacacagacacccacattttgcctatactttgaccgtacagttgttgatgacatgaatttatgaacatccgtcaatgttagggttgtatagagtttc |
699 |
Q |
| |
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| T |
43392580 |
agacaca--------cacattttgcctatactttgaccgtacaattgttgatgacatgaatttatgaacatccgtcaatgttagggttgtatagagtttc |
43392489 |
T |
|
| Q |
700 |
aattgaagagaactgttgccaacacactctctttcaaccattttctctattgttggttgaaattatggcatagaaaaactattatagaatatgcatgtat |
799 |
Q |
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| T |
43392488 |
aattgaagagaactgttgccaacacactctctttcaaccattttctctattgttggttgaaattatggcatagaaaaactattatagaatatgcatgtat |
43392389 |
T |
|
| Q |
800 |
ttatatgtcacaggttctg |
818 |
Q |
| |
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| T |
43392388 |
ttatatgtcacaggttctg |
43392370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 8e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 72 - 301
Target Start/End: Original strand, 33217655 - 33217887
Alignment:
| Q |
72 |
caagttgtgggatggcctccaatccgatctttcaggaagaactcaatggtttcacagcctcaaaagaatgat---gctgatgcagaagccaaatctgaat |
168 |
Q |
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|||||||| |||||||| |||||||| |||||||||||||| ||||||| | || |||||||||||||| | ||||| |||||||||||||| || |
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| T |
33217655 |
caagttgtaggatggccaccaatccgttctttcaggaagaattcaatggccactcaatctcaaaagaatgataatgatgatgtagaagccaaatctggat |
33217754 |
T |
|
| Q |
169 |
gtctatatgtaaaagtcagcatggaaggtgctccatacttgaggaaagtggatctgaatggttttagctcttatagggaactttcttcagcactcgaaaa |
268 |
Q |
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| || ||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||| || |||| | |||||| ||||| ||||| ||||| |
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| T |
33217755 |
gcctttatgtaaaagttagcatggatggtgctccatacttgaggaaagtggatctcaaaatttttggcacttacaaggaactatcttctgcactagaaaa |
33217854 |
T |
|
| Q |
269 |
gatgttcagttgttttacaatcagtgagttttt |
301 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |
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| T |
33217855 |
gatgtttagttgttttacaatcagtgagttttt |
33217887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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