View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3512_low_7 (Length: 595)
Name: NF3512_low_7
Description: NF3512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3512_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 244 - 585
Target Start/End: Complemental strand, 29908340 - 29907999
Alignment:
| Q |
244 |
atcctctataaatagtcctggatttctttctgtttctgacaactcatctcattcttttctttttccgatttccgatctgctatggtttaaatcannnnnn |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
29908340 |
atcctctataaatagtcctggatttctttctgtttctcacaactcatctcattcttttctttttccgatttccaatctgctctggtttaaatcttttttt |
29908241 |
T |
|
| Q |
344 |
nnaatgtcttctgcaatgttgaaaggtgttaggtttgataacaagggtcttaggtctggtcacagaggtatcgcagctttgatttggtgtctgatgttgt |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
29908240 |
ttaatgtcttctgcaatgttgaaaggtgttaggtttgataacaagggtcttaggtctggtcacagaggtatcgcagctttgatttgctgtctgatgttct |
29908141 |
T |
|
| Q |
444 |
tcctggaaaggagtcttggggattcaagcttcatgttgttcgtttgtgggaggtgcgtgcttttcttcaatcataacagatcaattcgattgagatggtg |
543 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29908140 |
tcctggaagagagtcttggagattcaagcttcgtgttgttcgtttgtgggaggtgcgtgattttcttcaatcataacagatcaattcaattgagatggtg |
29908041 |
T |
|
| Q |
544 |
tttgttgatgagaaggtttgtattgctgtttgtttgcctttg |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29908040 |
tttgttgatgagaaggtttgtattgctgtttgtttgcctttg |
29907999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 29908486 - 29908337
Alignment:
| Q |
73 |
gctgtcattatcaaggaatagaggatgatttgaagatgcacgtggggtttgattgaattccttcaattcctccaattaatttaagctaattcaattacat |
172 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29908486 |
gctgtcgttatcaaggaataaaggatgatttgaagatgcacgtggggtttgattgaattccttcaattcctccaattaatttaagctaattcaattacat |
29908387 |
T |
|
| Q |
173 |
gtccattcacatcaaaggagaatttatctttccccctctttttcaaatcc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29908386 |
gtccattcacatcaaaggagaatttatctttccccctctttttcaaatcc |
29908337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 561
Target Start/End: Complemental strand, 29908984 - 29908839
Alignment:
| Q |
416 |
gcagctttgatttggtgtctgatgttgttcctggaaaggagtcttggggattcaagcttcatgttgttcgtttgtgggaggtgcgtgcttttcttcaatc |
515 |
Q |
| |
|
|||| |||||| || | ||||||| || ||||||||||||||||||| |||||| ||| ||| || ||| ||||||||| | ||| |||||||| | |
|
|
| T |
29908984 |
gcagttttgatctgttatctgatgctgctcctggaaaggagtcttggagattcattgttcgtgtggtgcgtctgtgggaggctcctgcgtttcttcatcc |
29908885 |
T |
|
| Q |
516 |
ataacagatcaattcgattgagatggtgtttgttgatgagaaggtt |
561 |
Q |
| |
|
||||| | |||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
29908884 |
tgaacaggtgaattcggttgagatggtgttggttgatgagaaggtt |
29908839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University