View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3513_low_1 (Length: 820)
Name: NF3513_low_1
Description: NF3513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3513_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 572; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 18 - 621
Target Start/End: Complemental strand, 54395978 - 54395375
Alignment:
| Q |
18 |
gactttgattccaaggaacacgacgattcctactaagaaggagcagattttctcaacttactcagataaccaacctggtgttttgattcaagtttttgaa |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54395978 |
gactttgattccaaggaacacgacgattcctacgaagaaggagcagattttctcaacttactcagataaccaacctggtgttttgattcaagtttttgaa |
54395879 |
T |
|
| Q |
118 |
ggtgaacgtgcaagaacaaaggataataatcttcttgggaaatttgaactcactggtattcctcctgctccaaggggtgtaccacagatcaatgtatgtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
54395878 |
ggtgaacgtgcaagaacaaaggataataatcttcttgggaaatttgaactcactggtattcctcctgctccaagaggtgtaccacagatcaatgtttgtt |
54395779 |
T |
|
| Q |
218 |
tcgacattgatgcgaatggtatattgaacgtttctgctgaagataaaacagctggagtgaagaacaagataacgatcacgaatgataaggggaggttgag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54395778 |
tcgacattgatgcgaatggtatattgaacgtttctgctgaagataaaacagctggagtgaagaacaagataacgatcacgaatgataaggggaggttgag |
54395679 |
T |
|
| Q |
318 |
caaggaagagatagagaagatggtgaaagatgcagagaagtataaggcagaggacgaagaggtgaagaagaaagtggaggcgaagaattcacttgagaat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54395678 |
caaggaagagatagagaagatggtgaaagatgcagagaagtataaggcagaggatgaagaggtgaagaagaaagtggaggcgaagaattcaattgagaat |
54395579 |
T |
|
| Q |
418 |
tatgcttataatatgaggaatacaataaaggatgagaagattggtgggaagttgagtcatgatgataaggagaagattgagaaggctgtggaagatgcta |
517 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
54395578 |
tatgcttataatatgaggaatacaattaaggatgagaagattggtgggaagttgagtcatgaagataaggagaagattgagaaggctgtggaagatgcaa |
54395479 |
T |
|
| Q |
518 |
tacagtggttggaggggaatcaaatggcggaagtggatgagtttgaggataagcagaaggagttggaaggaatttgtaatcctattattgctaagatgta |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54395478 |
tacagtggttggaggggaatcaaatggcggaagtggatgagtttgaggataagcagaaggagttggaaggaatttgtaatcctattattgctaagatgta |
54395379 |
T |
|
| Q |
618 |
tcaa |
621 |
Q |
| |
|
|||| |
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|
| T |
54395378 |
tcaa |
54395375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 679 - 761
Target Start/End: Complemental strand, 54395314 - 54395232
Alignment:
| Q |
679 |
tctaatgggacaggctctggagctggacctaagattgaagaggttgactaagtttttgaaacattggttgtatgtgtatgaaa |
761 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54395314 |
tctaatgggacaggctctggagctggacctaagattgaagaggttgactaagtttttgaaacattggttgtatgtgtatgaaa |
54395232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 22 - 497
Target Start/End: Original strand, 23588350 - 23588825
Alignment:
| Q |
22 |
ttgattccaaggaacacgacgattcctactaagaaggagcagattttctcaacttactcagataaccaacctggtgttttgattcaagtttttgaaggtg |
121 |
Q |
| |
|
|||||||| || ||||| || |||||||| ||||||||||| | || ||||| ||||| ||||| ||||||||||| ||||||||||| | |||||| | |
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| T |
23588350 |
ttgattcctagaaacacaaccattcctaccaagaaggagcaagtgttttcaacctactctgataatcaacctggtgtgttgattcaagtctatgaaggcg |
23588449 |
T |
|
| Q |
122 |
aacgtgcaagaacaaaggataataatcttcttgggaaa-tttgaactcactggtattcctcctgctccaaggggtgtaccacagatcaatgtatgtttcg |
220 |
Q |
| |
|
|| | |||| || ||||| ||| || ||||| || ||||| | | ||||| |||||||||||||||||||| || ||||||| ||| || || | |
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| T |
23588450 |
aaagaacaaggactcgtgataacaat-ttgttgggcaagtttgagttgtcgggtatccctcctgctccaaggggtgttcctcagatcactgtctgctttg |
23588548 |
T |
|
| Q |
221 |
acattgatgcgaatggtatattgaacgtttctgctgaagataaaacagctggagtgaagaacaagataacgatcacgaatgataaggggaggttgagcaa |
320 |
Q |
| |
|
|||||||||| ||||| || ||||| || || || || || || ||| | || ||| |||||||| || ||||| ||||| ||||| ||| | ||| |
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| T |
23588549 |
acattgatgccaatggcattttgaatgtctcagcagaggacaagacaacagggcagaaaaacaagattacaatcaccaatgacaagggtaggctctccaa |
23588648 |
T |
|
| Q |
321 |
ggaagagatagagaagatggtgaaagatgcagagaagtataaggcagaggacgaagaggtgaagaagaaagtggaggcgaagaattcacttgagaattat |
420 |
Q |
| |
|
|||||| || |||||||||||| | || || || ||||| ||| | |||||||| ||| || |||||||||||||| |||||| |||||||||| ||| |
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| T |
23588649 |
ggaagaaattgagaagatggtgcaggaagctgaaaagtacaagtctgaggacgaggagcacaaaaagaaagtggaggccaagaatgcacttgagaactat |
23588748 |
T |
|
| Q |
421 |
gcttataatatgaggaatacaataaaggatgagaagattggtgggaagttgagtcatgatgataaggagaagattga |
497 |
Q |
| |
|
|| || || |||||||| ||||| || || || ||||||| | ||||||| | |||||||||| |||| ||||| |
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|
| T |
23588749 |
gcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtctgctgatgataagaagaaaattga |
23588825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 23597352 - 23597425
Alignment:
| Q |
172 |
ggtattcctcctgctccaaggggtgtaccacagatcaatgtatgtttcgacattgatgcgaatggtatattgaa |
245 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||| ||| || || ||||| ||||| ||||| || ||||| |
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|
| T |
23597352 |
ggtattcctcctgctccaaggggtgttcctcagatcactgtctgctttgacatcgatgccaatggcattttgaa |
23597425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 22 - 356
Target Start/End: Complemental strand, 8102218 - 8101884
Alignment:
| Q |
22 |
ttgattccaaggaacacgacgattcctactaagaaggagcagattttctcaacttactcagataaccaacctggtgttttgattcaagtttttgaaggtg |
121 |
Q |
| |
|
||||||||||||||||| || ||||| || ||||||||||| ||||||| || || ||||| |||||||||||||||||||| ||||||| |||||||| |
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|
| T |
8102218 |
ttgattccaaggaacactaccattccaaccaagaaggagcaagttttctctacgtattcagacaaccaacctggtgttttgatccaagtttatgaaggtg |
8102119 |
T |
|
| Q |
122 |
aacgtgcaagaacaaaggataataatcttcttggg-aaatttgaactcactggtattcctcctgctccaaggggtgtaccacagatcaatgtatgtttcg |
220 |
Q |
| |
|
| | | ||||| |||||||| || ||| ||||| || ||||| || | || |||||||| || || | ||||| || ||||||| ||| ||||| | |
|
|
| T |
8102118 |
agagaaccagaaccaaggataacaa-cttgttgggtaagtttgagctttccggaattcctccagcaccccgcggtgttcctcagatcactgtttgttttg |
8102020 |
T |
|
| Q |
221 |
acattgatgcgaatggtatattgaacgtttctgctgaagataaaacagctggagtgaagaacaagataacgatcacgaatgataaggggaggttgagcaa |
320 |
Q |
| |
|
| |||||||| |||||||| ||||| || |||||||| || |||||| | || |||||||||||| || ||||| || |||||||| |||||| || |
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| T |
8102019 |
atattgatgccaatggtatcttgaatgtctctgctgaggacaaaacaaccgggcagaagaacaagattaccatcaccaacgataagggaaggttgtcaaa |
8101920 |
T |
|
| Q |
321 |
ggaagagatagagaagatggtgaaagatgcagagaa |
356 |
Q |
| |
|
|||||| || ||||||||||| |||| |||||||| |
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|
| T |
8101919 |
ggaagaaatcgagaagatggtccaagaagcagagaa |
8101884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 25 - 341
Target Start/End: Original strand, 8018033 - 8018349
Alignment:
| Q |
25 |
attccaaggaacacgacgattcctactaagaaggagcagattttctcaacttactcagataaccaacctggtgttttgattcaagtttttgaaggtgaac |
124 |
Q |
| |
|
|||||||||||||| || ||||| || ||||||||||| ||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
8018033 |
attccaaggaacaccacaattccaaccaagaaggagcaagttttctctacttactcagataaccaacctggtgtgttgatccaagtttatgaaggtgaga |
8018132 |
T |
|
| Q |
125 |
gtgcaagaacaaaggataataatcttcttggg-aaatttgaactcactggtattcctcctgctccaaggggtgtaccacagatcaatgtatgtttcgaca |
223 |
Q |
| |
|
| |||||||| | || || || ||| ||||| ||||| || || |||| |||||||| || || | ||||| || || |||| || || ||||||| |
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|
| T |
8018133 |
gagcaagaaccagagacaacaa-cttgttgggaaaattcgagctttctggcattcctccagcaccccgtggtgttcctcaaatcacagtttgcttcgaca |
8018231 |
T |
|
| Q |
224 |
ttgatgcgaatggtatattgaacgtttctgctgaagataaaacagctggagtgaagaacaagataacgatcacgaatgataaggggaggttgagcaagga |
323 |
Q |
| |
|
||||||| |||||||| ||||| || |||||||| || |||||| |||| |||||||||||| || ||||| ||||| || || |||||| ||||| |
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|
| T |
8018232 |
ttgatgccaatggtatcttgaatgtctctgctgaggacaaaacaactgggcagaagaacaagattaccatcaccaatgacaaaggtaggttgtctaagga |
8018331 |
T |
|
| Q |
324 |
agagatagagaagatggt |
341 |
Q |
| |
|
||| || ||||||||||| |
|
|
| T |
8018332 |
agaaattgagaagatggt |
8018349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 28 - 452
Target Start/End: Complemental strand, 39985191 - 39984767
Alignment:
| Q |
28 |
ccaaggaacacgacgattcctactaagaaggagcagattttctcaacttactcagataaccaacctggtgttttgattcaagtttttgaaggtgaacgtg |
127 |
Q |
| |
|
|||||||| || || ||||| || ||||| || ||| ||||||| || || || || ||||| ||||| || ||||| |||||||||||||| || | |
|
|
| T |
39985191 |
ccaaggaataccactattccaacaaagaaagaacaggttttctctacatattctgacaaccagcctggcgtgttgatccaagtttttgaaggagagagga |
39985092 |
T |
|
| Q |
128 |
caagaacaaaggataataatcttcttgggaaa-tttgaactcactggtattcctcctgctccaaggggtgtaccacagatcaatgtatgtttcgacattg |
226 |
Q |
| |
|
||||||||| || || ||| || ||||| || |||||||| | || ||||||||||| || || ||||| || || |||| ||| || || ||||||| |
|
|
| T |
39985091 |
caagaacaagagacaacaat-ttgttgggcaagtttgaactttccggcattcctcctgcccccagaggtgttccccaaatcactgtgtgctttgacattg |
39984993 |
T |
|
| Q |
227 |
atgcgaatggtatattgaacgtttctgctgaagataaaacagctggagtgaagaacaagataacgatcacgaatgataaggggaggttgagcaaggaaga |
326 |
Q |
| |
|
|||| |||||||| ||||| || ||||| ||||| |||||| |||| ||||||||| || || ||||| ||||| ||||| || | |||||||| |
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|
| T |
39984992 |
atgccaatggtatcttgaatgtctctgcagaagacaaaacaactggccagaagaacaaaatcaccatcaccaatgacaagggtagactttcaaaggaaga |
39984893 |
T |
|
| Q |
327 |
gatagagaagatggtgaaagatgcagagaagtataaggcagaggacgaagaggtgaagaagaaagtggaggcgaagaattcacttgagaattatgcttat |
426 |
Q |
| |
|
|| ||||||||||| |||| ||||||||||| ||| | || || |||||| |||||||| || ||||| |||||| || | || || ||||| || |
|
|
| T |
39984892 |
cattgagaagatggttcaagaggcagagaagtacaagtcggaagatgaagagcataagaagaaggtcgaggccaagaatgcattggaaaactatgcatac |
39984793 |
T |
|
| Q |
427 |
aatatgaggaatacaataaaggatga |
452 |
Q |
| |
|
|| |||||||| || || |||||||| |
|
|
| T |
39984792 |
aacatgaggaacaccattaaggatga |
39984767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 17648701 - 17648789
Alignment:
| Q |
178 |
cctcctgctccaaggggtgtaccacagatcaatgtatgtttcgacattgatgcgaatggtatattgaacgtttctgctgaagataaaac |
266 |
Q |
| |
|
||||||||||| || ||||| |||||||||| |||||| || ||||||||||| |||||||||||| | || | ||||||||| ||||| |
|
|
| T |
17648701 |
cctcctgctcctagaggtgttccacagatcagtgtatgctttgacattgatgctaatggtatattggatgtctttgctgaagacaaaac |
17648789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 17706448 - 17706530
Alignment:
| Q |
178 |
cctcctgctccaaggggtgtaccacagatcaatgtatgtttcgacattgatgcgaatggtatattgaacgtttctgctgaaga |
260 |
Q |
| |
|
||||||||||| ||||||| |||||||||| |||||| || ||||||||| | |||||||||||||| || | ||||||||| |
|
|
| T |
17706448 |
cctcctgctccttggggtgttccacagatcattgtatgctttgacattgatcctaatggtatattgaatgtctttgctgaaga |
17706530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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