View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3513_low_4 (Length: 419)
Name: NF3513_low_4
Description: NF3513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3513_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 168; Significance: 7e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 178 - 365
Target Start/End: Original strand, 31598522 - 31598709
Alignment:
| Q |
178 |
aatttatatttcaacgtgaagtatttgttgcatgccaatccttttagggcttctattcttatgatcttgatcactgacactcaagctgttgatggcataa |
277 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31598522 |
aattcatatttcaacgtgaagtatttattgcatgccaatccttttagggcttctattctcatgatcttgatcactgacactcaagctgttgatggcataa |
31598621 |
T |
|
| Q |
278 |
ttaagactatcaagttgtagatttcttgttgtgctttgaagtatactatttgttcctggatctcttcccttccctccacttccactac |
365 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31598622 |
ttaagactatcaagttgaagatttcttgttgtgctttgaagtatactatttgttcctggatctcttcccttccctccacttccgctac |
31598709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 53 - 188
Target Start/End: Original strand, 31598346 - 31598481
Alignment:
| Q |
53 |
aagatgaagttcaaattaattttcattattattctacaaagaagaaaattactatcaattattcaacaaccagaacctctagttgcataattacagttgt |
152 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31598346 |
aagatgaagttcaagttaattttcattattattctacaaagaagaaaattactatcaattattcaacaaccagaacctctagttgcataattacagttat |
31598445 |
T |
|
| Q |
153 |
caagaccatggtgaattcttgtcaaaatttatattt |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
31598446 |
caagaccatggtgaattcttgtcaaaatttatattt |
31598481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 194 - 360
Target Start/End: Complemental strand, 31602319 - 31602150
Alignment:
| Q |
194 |
tgaagtatttgttgcatgccaatccttttagggcttctattcttatgatcttgatcactgacactcaagctgttgatggcataat---taagactatcaa |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| | || ||| |||||| ||||||||||| ||||| || |||||| |||| ||||||| |
|
|
| T |
31602319 |
tgaagtatttgttgcatgccaatccttttaggacttctattttcatcatcatgatcaatgacactcaagttgttggtgacataattaataaggctatcaa |
31602220 |
T |
|
| Q |
291 |
gttgtagatttcttgttgtgctttgaagtatactatttgttcctggatctcttcccttccctccacttcc |
360 |
Q |
| |
|
|||| ||| |||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||||| |
|
|
| T |
31602219 |
gttgaagacttcttgctgtgctttgaagtatactatttgtttttggatcacttccccctcctccacttcc |
31602150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University