View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3513_low_5 (Length: 367)
Name: NF3513_low_5
Description: NF3513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3513_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 39487837 - 39487498
Alignment:
| Q |
18 |
agctcgacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatcacagatttagcatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39487837 |
agctcgacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatcacagatttagcatt |
39487738 |
T |
|
| Q |
118 |
catcaaactgcgccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactcttgaacacccgagaaaggagg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
39487737 |
catcaaactgcgccaagcatagctgggctggtagtcaatttgagcatccaaaaaacatgatctggcaaagtacatactcttgaacacccgagaaaggagg |
39487638 |
T |
|
| Q |
218 |
gagtgttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctccgaagccaagtcctcctttgctttttgctc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39487637 |
gagtgttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctctgaagccaagtcctcctttgctttttgctc |
39487538 |
T |
|
| Q |
318 |
ttcctaatcgatcccaactcatccagtgaattttcctttg |
357 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39487537 |
ttcctaaccgatcccaactcatccagtgaattttcctttg |
39487498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 29 - 354
Target Start/End: Original strand, 5806936 - 5807262
Alignment:
| Q |
29 |
tcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatct-ccatccgagatcaatcacagatttagcattcatcaaactg |
127 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||||||||||||| || ||||| ||||| || | | || |||||||| | ||||| ||||| ||| || |
|
|
| T |
5806936 |
tcaggaagccaagggtccttccatattctaacttgttgcccgtttccaattgaccacctgcaaaccaagatcaattattgattttgcattacacaagctt |
5807035 |
T |
|
| Q |
128 |
cgccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactcttgaacacccgagaaaggagggagtgttcgt |
227 |
Q |
| |
|
| ||||||||| || ||||| || ||| | | || | |||||||| || ||| | ||||||||||||||| ||||||| |||||||| |||||||| | |
|
|
| T |
5807036 |
ctccaagcataactaggctgataaccactacgtgccttcaaaaaacttgttctcggaaagtacctactcttaaacacccatgaaaggagagagtgttcat |
5807135 |
T |
|
| Q |
228 |
tgttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctccgaagccaagtcctcctttgctttttgctcttcctaatcg |
327 |
Q |
| |
|
|| ||| || ||||| |||||||| | || || || ||||| || || |||| |||| || || || |||||||| | ||||||||| |||||| |
|
|
| T |
5807136 |
tggacatcagccgccaccattgctttcataagagagctttgttgaactcgttgaatcctctaaaaccgagacctccttttccttttgctctccctaattt |
5807235 |
T |
|
| Q |
328 |
atcccaactcatccagtgaattttcct |
354 |
Q |
| |
|
|||||||| ||||| ||||||||||| |
|
|
| T |
5807236 |
gtcccaacttatccaatgaattttcct |
5807262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 46033959 - 46033621
Alignment:
| Q |
18 |
agctcgacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatcacagatttagcatt |
117 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46033959 |
agcttgacagttcaggaagccaaaggtctttccaaattttaactt-ttgcccattaccaatcgaccatctccatccgagatcaattacagatttagcatt |
46033861 |
T |
|
| Q |
118 |
catcaaactgcgccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactcttgaacacccgagaaaggagg |
217 |
Q |
| |
|
||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46033860 |
catcaaactacaccaagcatagctgggctggcagccaatttgagcatccaaaaaacatgatctggcaaagtacctactcttgaacacccgagaaaggagg |
46033761 |
T |
|
| Q |
218 |
gagtgttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctccgaagccaagtcctcctttgctttttgctc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46033760 |
gagtgttcgttgttcatgagtcgccaacattgcttccctagaagtgccttgttaaaatcactgaagcctctgaagccaagtcctcctttgctttttgctc |
46033661 |
T |
|
| Q |
318 |
ttcctaatcgatcccaactcatccagtgaattttcctttg |
357 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46033660 |
ttcctaaccgatcccaactcatccagtgaattttcctttg |
46033621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University