View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3513_low_8 (Length: 275)
Name: NF3513_low_8
Description: NF3513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3513_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 40121217 - 40121461
Alignment:
| Q |
16 |
atgtcagagcaaaatgtaagacatattgcaatgtgaaggatctcaaatatgaggatgagcaagaagtcaaatcaaaagatgcatgaaaaacactcatgga |
115 |
Q |
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| T |
40121217 |
atgtcagagcaaaatgtaagacatattgcaatgtgaaggatctcaaatataaggatgagcaagaggtcaaatcaaaagatgcatgaaaaacactcatgga |
40121316 |
T |
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| Q |
116 |
tatatgagaagctatatatagttgagtctaagtcagaggaaacctatgttgattctcttcgtttgttcaaaattgtatgcacaattttattttattttta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||| | || || | |||||| |
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| T |
40121317 |
tatatgagaagctatatatagttgagtctaagtcagaggaaacatatgttgattctcttcgtttcttcaaaattg--tgcattttatttttattttttta |
40121414 |
T |
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| Q |
216 |
aaattatatgtgaaagatactattttggggtcagtgaagaagaaagt |
262 |
Q |
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| T |
40121415 |
aaattatatgtgaaagatactattttggggtcagtgaagaagaaagt |
40121461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 19029596 - 19029642
Alignment:
| Q |
16 |
atgtcagagcaaaatgtaagacatattgcaatgtgaaggatctcaaa |
62 |
Q |
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| T |
19029596 |
atgttagagcaaaatgtaagacatattgcaaagttaaggatctcaaa |
19029642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 34619740 - 34619561
Alignment:
| Q |
16 |
atgtcagagcaaaatgtaagacatattgcaatgtgaaggatctcaaatatgaggatgagcaagaagtcaaatcaaaagatgcatgaaaaacactcatgga |
115 |
Q |
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|||||| || || |||||||||| ||||||| || || | |||||| ||| |||| | | ||||||||||||||||||||| ||| |||||| |||| || |
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| T |
34619740 |
atgtcaaaggaagatgtaagacagattgcaaagtcaaagctctcaattataaggaagggaaagaagtcaaatcaaaagatgtatggaaaacaatcataga |
34619641 |
T |
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| Q |
116 |
tatatgagaagctatatatagttgagtctaagtcagaggaaacctatgttgattctcttcgtttgttcaaaattgtatgcacaa |
199 |
Q |
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| ||| |||| |||||| || | | ||||| |||||| ||| ||| || ||||||||||||||||||||||| |||| |
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| T |
34619640 |
tgcatggcaagc----tatagtggaatttgagtcaaaggaaatatatcttggtttccttcgtttgttcaaaattgtatgtacaa |
34619561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 10350177 - 10350223
Alignment:
| Q |
16 |
atgtcagagcaaaatgtaagacatattgcaatgtgaaggatctcaaa |
62 |
Q |
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|||| |||||||||||||||||| ||||||| || |||||||||||| |
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| T |
10350177 |
atgttagagcaaaatgtaagacagattgcaaagttaaggatctcaaa |
10350223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 13425829 - 13425790
Alignment:
| Q |
24 |
gcaaaatgtaagacatattgcaatgtgaaggatctcaaat |
63 |
Q |
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| T |
13425829 |
gcaaaatgtaagacatattgcaacgttaaggatctcaaat |
13425790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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