View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3513_low_9 (Length: 259)
Name: NF3513_low_9
Description: NF3513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3513_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 254
Target Start/End: Complemental strand, 2892415 - 2892175
Alignment:
| Q |
23 |
tagagtttggtcaacttattttatt----tgaatctttcgttcatactcaatcgactttat-----tattataggtggtctgcaattgcatctcgattac |
113 |
Q |
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| T |
2892415 |
tagagtttgatcaacttattttattaatttgaatctttcgttgatactcaatcgactctatcattatattataggtggtctgcaattgcatctcgattac |
2892316 |
T |
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| Q |
114 |
caggaaggacggacaatgaaataaaaaactattggaacacacacattaggaaaaggcttttgagaatgggaattgatccagtaacacatactcctagact |
213 |
Q |
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| T |
2892315 |
caggaaggacggacaatgaaataaaaaactattggaacacacacattaggaaaaggcttttgagaatgggaattgatccagtaacacatactcctagact |
2892216 |
T |
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| Q |
214 |
tgacttattggacctctcttctattctatgttcatctctct |
254 |
Q |
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| T |
2892215 |
tgacttattggacctctcttctattctatgttcatctctct |
2892175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 168
Target Start/End: Complemental strand, 37881397 - 37881310
Alignment:
| Q |
81 |
attataggtggtctgcaattgcatctcgattaccaggaaggacggacaatgaaataaaaaactattggaacacacacattaggaaaag |
168 |
Q |
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| T |
37881397 |
attataggtggtctgctatagctgctagattacccggaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaag |
37881310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 254
Target Start/End: Original strand, 36246513 - 36246682
Alignment:
| Q |
85 |
taggtggtctgcaattgcatctcgattaccaggaaggacggacaatgaaataaaaaactattggaacacacacattaggaaaaggcttttgagaatggga |
184 |
Q |
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| T |
36246513 |
taggtggtcttcaattgcttctaggctaccaggaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatggga |
36246612 |
T |
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| Q |
185 |
attgatccagtaacacatactcctagacttgacttattggacctctcttctattctatgttcatctctct |
254 |
Q |
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| T |
36246613 |
attgatcctgtgacacataatccacgttttgatcttttggacctatcttctatcctaaattcatctctct |
36246682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 50777543 - 50777504
Alignment:
| Q |
110 |
ttaccaggaaggacggacaatgaaataaaaaactattgga |
149 |
Q |
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| T |
50777543 |
ttaccaggaagaacggacaatgaaataaaaaattattgga |
50777504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 53557723 - 53557767
Alignment:
| Q |
110 |
ttaccaggaaggacggacaatgaaataaaaaactattggaacaca |
154 |
Q |
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| T |
53557723 |
ttacctggaagaacagacaatgacataaaaaactattggaacaca |
53557767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 38707205 - 38707243
Alignment:
| Q |
111 |
taccaggaaggacggacaatgaaataaaaaactattgga |
149 |
Q |
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| T |
38707205 |
taccaggtagaacggacaatgaaataaaaaactattgga |
38707243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 9622085 - 9622133
Alignment:
| Q |
108 |
gattaccaggaaggacggacaatgaaataaaaaactattggaacacaca |
156 |
Q |
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||||||||||| | || |||||||||||||| ||||| ||||||||||| |
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| T |
9622085 |
gattaccaggacgaacagacaatgaaataaagaactactggaacacaca |
9622133 |
T |
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