View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3514_high_1 (Length: 375)
Name: NF3514_high_1
Description: NF3514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3514_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 366
Target Start/End: Complemental strand, 39908701 - 39908346
Alignment:
| Q |
12 |
gagatgaaatataccctagaaaaagacccaaagcccaaaggaaggaccacggcatcgttcaaatagaaaaccatatgatnnnnnnnntt-aatgatgttt |
110 |
Q |
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| T |
39908701 |
gagaagaaatataccctagaaaaagacccaaagcccaaaggaaggaccacggcatcgttcaaatagaaaaccatatgataaaaaaaatttaatgatgttt |
39908602 |
T |
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| Q |
111 |
tgaaaaccaatcaagaagaagaacatgtgtagcttcattgacacgtatcatgtttatgtgtttgtttcacaccttgaaataaagaagaaaacaattagga |
210 |
Q |
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| T |
39908601 |
tgaaaaccaatcaagaagaagaacatgtgtagcttcattgacacgtatcatgtttatgtgtttgtttcacaccttgaaataaagaagaaaacaattagga |
39908502 |
T |
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| Q |
211 |
acaaaacacctatgnnnnnnntcaacggcatgagatcttgttccctannnnnnngttatacaggttggtctctaacaatttgattatatactaatcgcaa |
310 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39908501 |
acaaaacacctatgaaaaaaatcaacggcatgagatcttgttccctatttttttgttatacaggttggtctctaacaatttgattatatactaatcacaa |
39908402 |
T |
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| Q |
311 |
ttagttgctaagcacaaccaatagtgtaggcttgataccaaacaactagccctttg |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39908401 |
ttagttgctaagcacaaccaatagtgtaggcttgataccaaacaactagccctttg |
39908346 |
T |
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