View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3514_high_2 (Length: 343)
Name: NF3514_high_2
Description: NF3514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3514_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 37460600 - 37460273
Alignment:
| Q |
1 |
ttcctttaagaatgacattgtaagatgcaaaccttagatggattattcagtaactgatcttttgatgagatgctatcatcattcttcatgaaagaccatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37460600 |
ttcctttaagaatgacattgtaagatgcaaaccttagatggactattcagtaactgatcttgtgatgagatgctatcatcattcttcatgaaagaccatg |
37460501 |
T |
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| Q |
101 |
tatccctaccgcgaatgcatgacaaatcaatggaaggaagcaagctagatggcagattcaactnnnnnnnnttaagcatagtcagagttgcattctaaaa |
200 |
Q |
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| T |
37460500 |
tatccctaccgcgaatgcatgacaaatcaatggaaggaagcaagctagatggcagattcaactaaaaaaaattaagcatagtcagagttgcattctaaaa |
37460401 |
T |
|
| Q |
201 |
tcaaacaagatcaaaacctgaataaaaactcactgaggcatcagatactcgatttaatcacctttgttgttgaaaatgctgggactgataatcctataaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37460400 |
tcaaacaagatcaaaacctgaataaaaactcactgaggcatcagatactcgatttaatcacctttgttgttgaaaatgctgggactgataatcctataaa |
37460301 |
T |
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| Q |
301 |
taagccaagaaatcctccaaagaaaaat |
328 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
37460300 |
taagccaagaaatcctccaaagaaaaat |
37460273 |
T |
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