View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3514_high_3 (Length: 331)

Name: NF3514_high_3
Description: NF3514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3514_high_3
NF3514_high_3
[»] chr2 (2 HSPs)
chr2 (36-240)||(20554654-20554859)
chr2 (238-301)||(20553791-20553854)
[»] chr7 (2 HSPs)
chr7 (18-177)||(5515316-5515478)
chr7 (135-168)||(46159372-46159405)
[»] chr4 (5 HSPs)
chr4 (23-177)||(35594099-35594255)
chr4 (18-172)||(21680235-21680392)
chr4 (18-172)||(35452222-35452378)
chr4 (26-118)||(33686858-33686951)
chr4 (18-114)||(43623554-43623651)
[»] chr6 (1 HSPs)
chr6 (25-113)||(4465647-4465736)
[»] chr1 (3 HSPs)
chr1 (130-177)||(13571619-13571666)
chr1 (130-177)||(20565251-20565298)
chr1 (130-172)||(44835722-44835764)
[»] chr5 (2 HSPs)
chr5 (127-172)||(1669865-1669910)
chr5 (143-177)||(5863196-5863230)
[»] chr8 (1 HSPs)
chr8 (96-172)||(13582456-13582534)
[»] scaffold0012 (1 HSPs)
scaffold0012 (127-177)||(99521-99571)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 20554859 - 20554654
Alignment:
Q  36 ttaagaaacctattagcaaccaaaataaaagacaatagatcaaatgtatgcagtacacttttattagcctctataaaatggatacat--gcgttataaaa 133  Q
    |||||||||| ||| |||| ||||||||||| ||||||||||||| |||| | ||||  ||||||||||||||  ||||||||| ||  |||||||||||    
T  20554859 ttaagaaacccatttgcaatcaaaataaaaggcaatagatcaaatatatgtaatacaggtttattagcctctaacaaatggatatatatgcgttataaaa 20554760  T
Q  134 atttattatatatacatgcaatatatgcttataaagtggaaaaagggtaaatttattgccatccattttaaccaaaagcactaacacgacatttatttta 233  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  20554759 atttattatatatacatgcaatatatgcttgtaa-gtggaaaaagggtaaatttaatgccatccattttaaccaaaaacactaacacgacatttatttta 20554661  T
Q  234 ttttatt 240  Q
    |||||||    
T  20554660 ttttatt 20554654  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 20553854 - 20553791
Alignment:
Q  238 attggatcatctcctttcaatcgctctctccttcgccctcctttcatattatgtgtctatctct 301  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  20553854 attggatcatctcctttcaatcgctctctccttctccctcctttcatattatgtgtttatctct 20553791  T

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Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 5515316 - 5515478
Alignment:
Q  18 cttactccaaattacaaattaagaaacc-tattagcaaccaaaataaaagacaatagatcaaatgtatgcagtacacttttattagcctctataaaatgg 116  Q
    |||||||||||||| ||| ||||||||| ||||||  || |||||||||||| ||| ||||||| ||| || ||||| ||||||||| |||| |||||||    
T  5515316 cttactccaaattataaagtaagaaaccctattagatacaaaaataaaagacgataaatcaaatctatacaatacacatttattagcgtctacaaaatgg 5515415  T
Q  117 atacatgcgttata--aaaatttattatatatacatgcaatatatgcttataaagtggaaaaa 177  Q
    ||  |   ||| ||  ||| ||||||| ||||||||||||||||||| |||||||||| ||||    
T  5515416 atgtaaaagttctaccaaattttattagatatacatgcaatatatgcatataaagtgggaaaa 5515478  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 46159405 - 46159372
Alignment:
Q  135 tttattatatatacatgcaatatatgcttataaa 168  Q
    ||||||| ||||||||||||||||||||||||||    
T  46159405 tttattagatatacatgcaatatatgcttataaa 46159372  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 35594099 - 35594255
Alignment:
Q  23 tccaaattacaaattaagaaac-ctattagcaaccaaaataaaagacaatagatcaaatgtatgcagtacacttttattagcctctataaaatggat--a 119  Q
    ||||||||||||| |||  ||| ||||||| ||  |||||||| ||||||| || |||| |||||| ||||| |||||||| ||||| |||||||||  |    
T  35594099 tccaaattacaaagtaaagaactctattagaaataaaaataaa-gacaatatattaaatctatgcaatacacgtttattagtctctacaaaatggatgta 35594197  T
Q  120 catgcgttataaaaatttattatatatacatgcaatatatgcttataaagtggaaaaa 177  Q
    ||  |  || |||| ||||||  ||||||||||||||||| |||||||||||||||||    
T  35594198 caaactctacaaaattttattgaatatacatgcaatatatacttataaagtggaaaaa 35594255  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 21680392 - 21680235
Alignment:
Q  18 cttactccaaattacaaattaagaaac-ctattagcaaccaaaataaaagacaatagatcaaatgtatgcagtacacttttattagcctctataaaatgg 116  Q
    |||| ||||||||||||| |||| ||| ||||||| ||| || |||||||  | ||||| |||| |||||| | |||  |||| |||||||| || ||||    
T  21680392 cttattccaaattacaaagtaaggaactctattagaaacaaatataaaaggaagtagattaaatatatgcaatgcacacttatcagcctctacaacatgg 21680293  T
Q  117 at--acatgcgttataaaaatttattatatatacatgcaatatatgcttataaagtgg 172  Q
    ||  ||| ||  || | || ||||||  ||||||||||||||||||||||||||||||    
T  21680292 atgtacaagctctacacaattttattggatatacatgcaatatatgcttataaagtgg 21680235  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 35452222 - 35452378
Alignment:
Q  18 cttactccaaattacaaattaagaaacc-tattagcaaccaaaataaaagacaatagatcaaatgtatgcagtacacttttattagcctctataaaatgg 116  Q
    |||| ||||||||| ||| |||  |||| |||||||||| |||||||| | || ||| |||||| |||||| | ||| |||||||||||||| ||||| |    
T  35452222 cttattccaaattataaagtaaagaaccatattagcaacaaaaataaatg-cagtaggtcaaatctatgcaattcacgtttattagcctctacaaaatag 35452320  T
Q  117 at--acatgcgttataaaaatttattatatatacatgcaatatatgcttataaagtgg 172  Q
    ||  ||| ||  || |||| ||||||  || |||||||||||||| ||||||||||||    
T  35452321 atgtacaagctctacaaaattttattggatgtacatgcaatatatacttataaagtgg 35452378  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 33686858 - 33686951
Alignment:
Q  26 aaattacaaattaagaaacct-attagcaaccaaaataaaagacaatagatcaaatgtatgcagtacacttttattagcctctataaaatggat 118  Q
    |||||||||| |||||||||| |||||  || ||||||||||  ||||||||||||  ||||| | |||  ||||||||||||| |||||||||    
T  33686858 aaattacaaaataagaaaccttattagacacaaaaataaaaggtaatagatcaaatccatgcaattcacgcttattagcctctacaaaatggat 33686951  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 43623554 - 43623651
Alignment:
Q  18 cttactccaaattacaaattaagaaacc-tattagcaaccaaaataaaagacaatagatcaaatgtatgcagtacacttttattagcctctataaaat 114  Q
    |||| ||||||||||||| |||| | || ||||| |||| ||||||||||    ||| |||||| |||||| |||||  |||||||||||||||||||    
T  43623554 cttattccaaattacaaagtaaggagccctattatcaacaaaaataaaagttggtaggtcaaatctatgcaatacacgcttattagcctctataaaat 43623651  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 4465736 - 4465647
Alignment:
Q  25 caaattacaaattaagaaacc-tattagcaaccaaaataaaagacaatagatcaaatgtatgcagtacacttttattagcctctataaaa 113  Q
    ||||||||||| |||| |||| |||||||||| || |||||||| |||||||||||| |||||| |||||  |||||| |||||||||||    
T  4465736 caaattacaaagtaaggaaccctattagcaacaaacataaaagataatagatcaaatttatgcaatacacacttattatcctctataaaa 4465647  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 13571666 - 13571619
Alignment:
Q  130 aaaaatttattatatatacatgcaatatatgcttataaagtggaaaaa 177  Q
    |||| ||||||  |||||||||||||||||||||||||||||||||||    
T  13571666 aaaattttattcgatatacatgcaatatatgcttataaagtggaaaaa 13571619  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 20565251 - 20565298
Alignment:
Q  130 aaaaatttattatatatacatgcaatatatgcttataaagtggaaaaa 177  Q
    |||| ||||||  ||||||||||||||||||||||| |||||||||||    
T  20565251 aaaactttattggatatacatgcaatatatgcttatgaagtggaaaaa 20565298  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 44835764 - 44835722
Alignment:
Q  130 aaaaatttattatatatacatgcaatatatgcttataaagtgg 172  Q
    |||| ||||| | ||||||||||||||||||||||||||||||    
T  44835764 aaaattttatcagatatacatgcaatatatgcttataaagtgg 44835722  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 1669865 - 1669910
Alignment:
Q  127 tataaaaatttattatatatacatgcaatatatgcttataaagtgg 172  Q
    ||||||| ||||||  ||||||||||||||||||||||||||||||    
T  1669865 tataaaattttattgaatatacatgcaatatatgcttataaagtgg 1669910  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 5863196 - 5863230
Alignment:
Q  143 atatacatgcaatatatgcttataaagtggaaaaa 177  Q
    |||||||||| ||||||||||||||||||||||||    
T  5863196 atatacatgccatatatgcttataaagtggaaaaa 5863230  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 13582534 - 13582456
Alignment:
Q  96 ttattagcctctataaaatggat--acatgcgttataaaaatttattatatatacatgcaatatatgcttataaagtgg 172  Q
    |||||||||| || |||||||||  ||| || | | |||| ||||||  ||||||||||||||||||||||||||||||    
T  13582534 ttattagcctatacaaaatggatgtacaagcttaacaaaattttattcgatatacatgcaatatatgcttataaagtgg 13582456  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 99571 - 99521
Alignment:
Q  127 tataaaaatttattatatatacatgcaatatatgcttataaagtggaaaaa 177  Q
    ||||||| ||||||  ||||||||||||||||| ||||| |||||||||||    
T  99571 tataaaattttattggatatacatgcaatatatacttatgaagtggaaaaa 99521  T

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