View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3514_high_5 (Length: 251)
Name: NF3514_high_5
Description: NF3514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3514_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 12643669 - 12643913
Alignment:
| Q |
1 |
cacataatagcaaattcacgctttgaataataaataggtgcagcaaggaatgaaaattaatagaagatagtgagtttaggcatgtgttgtttcaatggaa |
100 |
Q |
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| T |
12643669 |
cacataatagcaa-ttcacgctttaaataataaataggtgcagcaaggaatgaaaattattagaagatagtgagtttaggcatgtgttgtttcaatggaa |
12643767 |
T |
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| Q |
101 |
gattgttgtttgcatagtgttcttgttgattgatagcattaatttgctcgaaaacacgttagataggtgaacttggagaaatgatcatgattgtgaattc |
200 |
Q |
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| T |
12643768 |
gattgttgtttgcatagtgttcttgttgattgatagcattaatttgctggaaaacacgttagataggtgaacttggagaaaaaatcatgattgtgaattc |
12643867 |
T |
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| Q |
201 |
t-tgtcaaagaggcttaccggttgctgaagtccgagtccaacgtcc |
245 |
Q |
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| T |
12643868 |
tctgtcaaagaggcttacctgttgctgaagtccgagtccaacgtcc |
12643913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 5734583 - 5734819
Alignment:
| Q |
1 |
cacataatagcaaattcacgctttgaataataaataggtgcagcaaggaatgaaaattaatagaagatagtgagtttaggcatgtgttgtttcaatggaa |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5734583 |
cacataatagcaa-ttcacgctttgaataataaataggtgcagcaaggaatgaaaattattagaagatagtgagtttaggcatgtgttgtttcaatggaa |
5734681 |
T |
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| Q |
101 |
gattgttgtttgcatagtgttcttgttgattgatagcattaatttgctcgaaaacacgttagataggtgaacttggagaaatgatcatgattgtgaattc |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5734682 |
gattgttgtttgcatggtgttcttgttgattgatagcattaatttgctggaaaacacgttagataggtgaacttggagaaataatcatgattgtgaattc |
5734781 |
T |
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| Q |
201 |
ttgtcaaagaggcttaccggttgctgaagtccgagtccaac |
241 |
Q |
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| T |
5734782 |
---tccaaaagacttaccggttgctgaagtccgagtccaac |
5734819 |
T |
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