View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3515_high_1 (Length: 537)
Name: NF3515_high_1
Description: NF3515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3515_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 5332346 - 5332773
Alignment:
| Q |
1 |
agacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcctgaaccaactannnnnnnnnnnnnnnnnactaatga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
5332346 |
agacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcatgaaccaactattttttaatatttttttactaatga |
5332445 |
T |
|
| Q |
101 |
actatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttgagtttgataaaattttagtgaccccggannnnnnnnnngaagtt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||| |
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| T |
5332446 |
actatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttttgtttgataaaattttagtggccccggatttttttt--gaagtt |
5332543 |
T |
|
| Q |
201 |
tcaaagtgttgtaaaaaacacattgacacaaactcagtgtcaatctaaacatacactaagtctctaagaaagctttaggaccacaatttccatggtgacc |
300 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5332544 |
tcaaagtgttgtcaaaaacacattgacataaactcagtgtcaatctaaacatacactaagtctctaagaaagctttaggaccacaatttccatagtgacc |
5332643 |
T |
|
| Q |
301 |
atgatttctttaatatcactaggttaacacagccgttgcatgcacaaaacaatttaaaaccatggcacaaaaccatgaaaaattaatcaagctaaaagga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332644 |
atgatttctttaatatcactaggttaacacagccgttgtatgcacaaaacaatttaaaaccatggcacaaaaccatgaaaaattaatcaagctaaaagga |
5332743 |
T |
|
| Q |
401 |
attaaacaataggtggaagaactttccttc |
430 |
Q |
| |
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|||||||||||||| ||||||||||||||| |
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|
| T |
5332744 |
attaaacaataggtcgaagaactttccttc |
5332773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 5350065 - 5350492
Alignment:
| Q |
1 |
agacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcctgaaccaactannnnnnnnnnnnnnnnnactaatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
5350065 |
agacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcatgaaccaactattttttaatatttttttactaatga |
5350164 |
T |
|
| Q |
101 |
actatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttgagtttgataaaattttagtgaccccggannnnnnnnnngaagtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||| |
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| T |
5350165 |
actatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttttgtttgataaaattttagtggccccggatttttttt--gaagtt |
5350262 |
T |
|
| Q |
201 |
tcaaagtgttgtaaaaaacacattgacacaaactcagtgtcaatctaaacatacactaagtctctaagaaagctttaggaccacaatttccatggtgacc |
300 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
5350263 |
tcaaagtgttgtcaaaaacacattgacataaactcagtgtcaatctaaacatacactaagtctctaagaaagctttaggaccacaatttccatagtgacc |
5350362 |
T |
|
| Q |
301 |
atgatttctttaatatcactaggttaacacagccgttgcatgcacaaaacaatttaaaaccatggcacaaaaccatgaaaaattaatcaagctaaaagga |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5350363 |
atgatttctttaatatcactaggttaacacagccgttgtatgcacaaaacaatttaaaaccatggcacaaaaccatgaaaaattaatcaagctaaaagga |
5350462 |
T |
|
| Q |
401 |
attaaacaataggtggaagaactttccttc |
430 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |
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|
| T |
5350463 |
attaaacaataggtcgaagaactttccttc |
5350492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 259
Target Start/End: Complemental strand, 23585699 - 23585669
Alignment:
| Q |
229 |
caaactcagtgtcaatctaaacatacactaa |
259 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
23585699 |
caaactcagtgtcaatctaaacatacactaa |
23585669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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