View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3515_high_4 (Length: 304)
Name: NF3515_high_4
Description: NF3515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3515_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 13608921 - 13608646
Alignment:
| Q |
18 |
accacaaacaaaaacaacaaagattaattgataaaacaatccaagaaccaaaaatcatgacagtaaacatcaaatataatgacaaagtgctactgtaatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608921 |
accacaaacaaaaacaacaaagattaattgataaaacaatccaagaaccaaaaatcatgacagtaaacatcaaatataatgacaaagtgctactgtaatt |
13608822 |
T |
|
| Q |
118 |
aattgaaaaattcagtcaaatccttgaaaattattcgttcaatgaaacaggtaaagttttgttagtaaacttaaaagtgttgatcagcttgtggcaaaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608821 |
aattgaaaaattcagtcaaatccttgaaaattattcgttcaatgaaacaggtaaagttttgttagtaaacttaaaagtgttgatcagcttgtggcaaaca |
13608722 |
T |
|
| Q |
218 |
gagaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttagggctcccctccatct |
293 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608721 |
gagaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttagggctcccctccatct |
13608646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 183 - 293
Target Start/End: Original strand, 6472890 - 6473002
Alignment:
| Q |
183 |
taaacttaaaagtgttgatcag--cttgtggcaaacagagaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttaggg |
280 |
Q |
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||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6472890 |
taaacttaaaagtgttgatcacaacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggctacttgtgttaggg |
6472989 |
T |
|
| Q |
281 |
ctcccctccatct |
293 |
Q |
| |
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| T |
6472990 |
ctcccctccatct |
6473002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 6472803 - 6472857
Alignment:
| Q |
18 |
accacaaacaaaaacaacaaagattaattgataaaacaatccaagaaccaaaaat |
72 |
Q |
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||||| |||| ||| ||||||||||||||||||||||||| ||||| |||||||| |
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| T |
6472803 |
accacgaacataaataacaaagattaattgataaaacaattcaagagccaaaaat |
6472857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 31244713 - 31244625
Alignment:
| Q |
205 |
cttgtggcaaacagagaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttagggctcccctccatct |
293 |
Q |
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||||| ||||||| |||||| |||||||||| |||| | | ||||||||||||||| | ||||||||||| ||||||||| |||||||| |
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| T |
31244713 |
cttgttgcaaacatagaaaagactacttactgatcccttacatcccaaccagagagttcggctacttgtgctagggctcctctccatct |
31244625 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 31159718 - 31159766
Alignment:
| Q |
230 |
cttacttatccttcatatcccaaccagagagattggctacttgtgttag |
278 |
Q |
| |
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||||||||| | |||||||||||||||||||||||| ||||||||||| |
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| T |
31159718 |
cttacttatgatgcatatcccaaccagagagattggcgacttgtgttag |
31159766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 31244864 - 31244825
Alignment:
| Q |
33 |
aacaaagattaattgataaaacaatccaagaaccaaaaat |
72 |
Q |
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|||||| |||||||||||||||||| |||||||||||||| |
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| T |
31244864 |
aacaaaaattaattgataaaacaattcaagaaccaaaaat |
31244825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 14724250 - 14724144
Alignment:
| Q |
183 |
taaacttaaaagtgttgatcagcttgtggcaaacagagaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttagggct |
282 |
Q |
| |
|
|||||||||||| |||||| | ||||| || |||| ||||||||| ||||||| |||||| |||| ||| || || ||||||||||||||| || |||| |
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| T |
14724250 |
taaacttaaaagcgttgattatcttgttgctaacatagaaaatacaacttactgatcctttatattccagcc--agggattggctacttgtgctaaggct |
14724153 |
T |
|
| Q |
283 |
cccctccat |
291 |
Q |
| |
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||||||||| |
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| T |
14724152 |
cccctccat |
14724144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 291
Target Start/End: Original strand, 17599600 - 17599706
Alignment:
| Q |
183 |
taaacttaaaagtgttgatcagcttgtggcaaacagagaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttagggct |
282 |
Q |
| |
|
||||||||||||||||||| | ||||| || |||| ||||||||| ||||||| |||||| |||| ||| || || ||||||||||||| |||| ||| |
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| T |
17599600 |
taaacttaaaagtgttgattatcttgttgctaacatagaaaatacaacttactgatcctttatattccagcc--agggattggctacttgagttaaggca |
17599697 |
T |
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| Q |
283 |
cccctccat |
291 |
Q |
| |
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||||||||| |
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|
| T |
17599698 |
cccctccat |
17599706 |
T |
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