View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3515_high_7 (Length: 242)
Name: NF3515_high_7
Description: NF3515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3515_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3972253 - 3972032
Alignment:
| Q |
1 |
atagtaatatactgtggattgatagagctcgtaggtcggttcggtttatcttgaggagnnnnnnnttaactattagaatttattcaaaaaattcccccca |
100 |
Q |
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| T |
3972253 |
atagtaatatactatggattgatagagctcgtaggtcggttcggtttatcttgaggagaaaaaaattaactattagaatttattcaaaaaattcccccca |
3972154 |
T |
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| Q |
101 |
atacactaattcaatccatttcatggatctacagtttgtgcctattatgcttaattatgattcatt-nnnnnnnnctcaaacctcacatagaacaaaaat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3972153 |
atacactaattcaatccatttcatggatctacagtttgtgcctattatgcttaattatgattcattaaaaaaaaactcaaacctcacatagaacaaaaat |
3972054 |
T |
|
| Q |
200 |
aacacctacaaatagtttatac |
221 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
3972053 |
aacacctacaaatagtttatac |
3972032 |
T |
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