View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3515_low_11 (Length: 230)
Name: NF3515_low_11
Description: NF3515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3515_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 4599853 - 4599647
Alignment:
| Q |
8 |
gatggtaatgactatacttttattaccgtttctacgacaaccatggatcgcgacaaaattgtgacggtaatttaaaatcttctttatctgtttgaaggtt |
107 |
Q |
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| T |
4599853 |
gatggtaatgacta--ctttttttaccttttctacgacaaccatggatcacgacaaaattgtgacggtaatttaaaatcttctttatctgtttgcaggtt |
4599756 |
T |
|
| Q |
108 |
tatacagccactgacaaccggagagtatccagcaagcatggtgtctttcgtgaaagatttaccaaagttcactgaagagcaatctaaaagtcttattggg |
207 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4599755 |
tatacagccactgacaaccggagagtatccagcaaacatggtgtctttcgtgaaagatttaccaaagttcactgaagagcaatctaaaagtcttattggg |
4599656 |
T |
|
| Q |
208 |
tcatatgat |
216 |
Q |
| |
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||||||||| |
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| T |
4599655 |
tcatatgat |
4599647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 4624187 - 4623975
Alignment:
| Q |
8 |
gatggtaatgactatacttttattaccgtttctacgacaaccatggatcgcgacaaaattgtgacggta--atttaaaatcttctttatctgtttgaagg |
105 |
Q |
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| T |
4624187 |
gatggtaacaactatactttt-tgaccgtttctacaacaaccatggatcgcgacaaaattgtgaccgtataatttaaaatcttctttatctgtttgcagg |
4624089 |
T |
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| Q |
106 |
tttatacagccactgacaaccggagagtatccagcaagcatggtgtctttcgtgaaagat---ttaccaaagttcactgaagagcaatctaaaagtctta |
202 |
Q |
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| T |
4624088 |
tttatacagccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataagctaccaaagttcactgcagagcaatctaagagtctta |
4623989 |
T |
|
| Q |
203 |
ttgggtcatatgat |
216 |
Q |
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| T |
4623988 |
ttgggtcatatgat |
4623975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 25038291 - 25038168
Alignment:
| Q |
96 |
tgtttgaaggtttatacagccactgacaaccggagagtatccagcaagcatggtgtctttcgtg---aaagatttaccaaagttcactgaagagcaatct |
192 |
Q |
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|||||| |||||||| |||||||||||||| |||||||||||| ||||||||||||||| ||| || ||||||||||||||| |||||||||| |
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| T |
25038291 |
tgtttgtaggtttatgcagccactgacaacaggagagtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccagagagcaatct |
25038192 |
T |
|
| Q |
193 |
aaaagtcttattgggtcatatgat |
216 |
Q |
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|| | ||||||||| |||| |||| |
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| T |
25038191 |
aagattcttattggctcatttgat |
25038168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 25017186 - 25017063
Alignment:
| Q |
96 |
tgtttgaaggtttatacagccactgacaaccggagagtatccagcaagcatggtgtcttt--cgtgaaa-gatttaccaaagttcactgaagagcaatct |
192 |
Q |
| |
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|||||| |||||||| |||||| |||| || |||||||||||| ||||||||||||||| || |||| ||||||||||||||| ||||||||||| |
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| T |
25017186 |
tgtttgcaggtttatgcagccattgaccacaggagagtatccattaagcatggtgtcttttgcgggaaatcgtttaccaaagttcaccaaagagcaatct |
25017087 |
T |
|
| Q |
193 |
aaaagtcttattgggtcatatgat |
216 |
Q |
| |
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|| | |||||||| |||| |||| |
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| T |
25017086 |
aagatgcttattggctcatttgat |
25017063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 51 - 212
Target Start/End: Original strand, 18804667 - 18804828
Alignment:
| Q |
51 |
tggatcgcgacaaaattgtgacggtaatttaaaatcttctttatctgtttgaaggtttatacagccactgacaaccggagagtatccagcaagcatggtg |
150 |
Q |
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|||||| ||||| ||||| | | |||||||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||| ||||||||||||||| |
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| T |
18804667 |
tggatcacgacataattgcggcagtaatttaaaatcttctttatctgtttgcaggtttttacaaccactgacaacaggagagtacccagcaagcatggtg |
18804766 |
T |
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| Q |
151 |
tctttcgtgaaagatttaccaaagttcactgaagagcaatctaaaagtcttattgggtcata |
212 |
Q |
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||| || || ||||||||||||||| ||||||||| | | ||||||||||||||||| |
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| T |
18804767 |
tctaatttggaaacattaccaaagttcactaaagagcaatatgagagtcttattgggtcata |
18804828 |
T |
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