View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3515_low_12 (Length: 229)
Name: NF3515_low_12
Description: NF3515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3515_low_12 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 4600313 - 4600090
Alignment:
| Q |
7 |
gatagagcattatgacannnnnnnatccacatggttgatcc-tcttagtggtataaggtttgattgtttaatttctacgtgcagaaatgattttaaggac |
105 |
Q |
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| T |
4600313 |
gatagagcattatgacatttttttatccatatagttgatccctcttagtgatataaggtttgattgtttaatttctacgtgcagaaatgattttaaggac |
4600214 |
T |
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| Q |
106 |
tttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttacttttaacgagccattctcttactgtttgagtacatcacatcgttaca |
205 |
Q |
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| T |
4600213 |
tttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttacttttaatgagccattctcttattgtttgagtacatcacatcgttaca |
4600114 |
T |
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| Q |
206 |
aagccacacacaaccaacttcttt |
229 |
Q |
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| T |
4600113 |
aagccacacacaaccaacttcttt |
4600090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 65 - 228
Target Start/End: Complemental strand, 4624502 - 4624339
Alignment:
| Q |
65 |
ttgattgtttaatttctacgtgcagaaatgattttaaggactttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttacttttaa |
164 |
Q |
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| T |
4624502 |
ttgattgtttaatttctatatgcagaaaagattttaaggactttgtggatatatgcttcaaggaatttggagacagtgtaaagcattgggttacttttaa |
4624403 |
T |
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| Q |
165 |
cgagccattctcttactgtttgagtacatcacatcgttacaaagccacacacaaccaacttctt |
228 |
Q |
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| T |
4624402 |
tgagccattctcttacactttgagtacatcagattggtacaagtccacacacaaccaacttctt |
4624339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 186
Target Start/End: Complemental strand, 25038822 - 25038721
Alignment:
| Q |
85 |
tgcagaaatgattttaaggactttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttacttttaacgagccattctcttactgtt |
184 |
Q |
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| T |
25038822 |
tgcagaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggattaccttcaatgagccacactcttacagtt |
25038723 |
T |
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| Q |
185 |
tg |
186 |
Q |
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|| |
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| T |
25038722 |
tg |
25038721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 25189396 - 25189342
Alignment:
| Q |
118 |
tgcttccaagaatttggagatagagtaaagcattgggttacttttaacgagccat |
172 |
Q |
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| T |
25189396 |
tgcttcaaggaatttggagatagagtgaagtactgggttacttttaacgaaccat |
25189342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 25017715 - 25017642
Alignment:
| Q |
85 |
tgcagaaatgattttaaggactttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttac |
158 |
Q |
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| T |
25017715 |
tgcagaaatgattttcaggactatgccgagctatgcttcaaggaatttggagaccgagtgaagcattggattac |
25017642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 25160213 - 25160168
Alignment:
| Q |
127 |
gaatttggagatagagtaaagcattgggttacttttaacgagccat |
172 |
Q |
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| T |
25160213 |
gaatttggtgatagagtcaagtattgggttactttgaacgagccat |
25160168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 63 - 181
Target Start/End: Original strand, 18804057 - 18804175
Alignment:
| Q |
63 |
gtttgattgtttaatttctacgtgcagaaatgattttaaggactttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttactttt |
162 |
Q |
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|||| |||||||||||||||| |||||| ||||||| ||| |||||||||| |||||||| | ||||||||||| |||||||| |||||| ||||| || |
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| T |
18804057 |
gtttaattgtttaatttctacatgcagagatgatttcaagagctttgtggaggtatgcttcgaggaatttggagacagagtaaatcattggattactctt |
18804156 |
T |
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| Q |
163 |
aacgagccattctcttact |
181 |
Q |
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| T |
18804157 |
aatgagccatacttttact |
18804175 |
T |
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