View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3515_low_2 (Length: 398)

Name: NF3515_low_2
Description: NF3515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3515_low_2
NF3515_low_2
[»] chr6 (2 HSPs)
chr6 (171-383)||(2110576-2110806)
chr6 (134-188)||(2110827-2110881)
[»] chr2 (3 HSPs)
chr2 (133-243)||(28135115-28135225)
chr2 (8-84)||(28134870-28134946)
chr2 (107-135)||(28135001-28135029)
[»] chr8 (2 HSPs)
chr8 (133-243)||(44807947-44808057)
chr8 (4-84)||(44808214-44808294)
[»] chr3 (3 HSPs)
chr3 (133-243)||(2231417-2231526)
chr3 (4-83)||(2231697-2231776)
chr3 (107-135)||(2231609-2231637)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 171 - 383
Target Start/End: Complemental strand, 2110806 - 2110576
Alignment:
Q  171 aactaaaattaaaggaatgaaaaaggaagggaagattttccagatatattctgcgcatagacttcaatataac------------------gtggtacta 252  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||                  |||||||||    
T  2110806 aactaaaattaaaggaatgaaaaaggaagggaagattttccggatatattctgcgcatagacttcaatataactataagatctcatttaacgtggtacta 2110707  T
Q  253 ttatcagaattgtaataagaaagaaaatatatcctattttctgtttttaatgtaaaaataaatgaagagacttgttgaacaagacactatggtaatttaa 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  2110706 ttatcagaattgtaataagaaagaaaatatatcctattttctgtttttaatgtaaaaacaaatgaagagacttgttgaacaagacactatggtaacttaa 2110607  T
Q  353 cgtggcagtattactggctacagtaaatctt 383  Q
    |||||||||||||||||||||||||||||||    
T  2110606 cgtggcagtattactggctacagtaaatctt 2110576  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 2110881 - 2110827
Alignment:
Q  134 ttaaaatcattaaaatttcaatggaatatagctcaataactaaaattaaaggaat 188  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2110881 ttaaaatcataaaaatttcaatggaatatagctcaataactaaaattaaaggaat 2110827  T

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Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 28135115 - 28135225
Alignment:
Q  133 attaaaatcattaaaatttcaatggaatatagctcaataactaaaattaaaggaatgaaaaaggaagggaagattttccagatatattctgcgcatagac 232  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||    
T  28135115 attaaaatcataaaaatttcaatggaatatagctcaatatctaaaattaaagggatgaaaaaggaagggaagattttccggatatattctgcgtatagac 28135214  T
Q  233 ttcaatataac 243  Q
    |||||||||||    
T  28135215 ttcaatataac 28135225  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 28134870 - 28134946
Alignment:
Q  8 gacactgacaaatgctcagataatctggtgaaggaagcttttgaaatactttaacaaggagatggagaacctgaaca 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||    
T  28134870 gacactgacaaatgctcagataatctggtgaaggaagcttttgaaatactttaacaagcaggcggagaacctgaaca 28134946  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 135
Target Start/End: Original strand, 28135001 - 28135029
Alignment:
Q  107 tcttcataaatatttccagcacaaacatt 135  Q
    |||||||||||||||||||||||||||||    
T  28135001 tcttcataaatatttccagcacaaacatt 28135029  T

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Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 44808057 - 44807947
Alignment:
Q  133 attaaaatcattaaaatttcaatggaatatagctcaataactaaaattaaaggaatgaaaaaggaagggaagattttccagatatattctgcgcatagac 232  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  44808057 attaaaatcataaaaatttcaattgaatatagctcaatgactaaaattaaagggatgaaaagggaagggaagattttccggatatattctgcgtatagac 44807958  T
Q  233 ttcaatataac 243  Q
    |||||||||||    
T  44807957 ttcaatataac 44807947  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 44808294 - 44808214
Alignment:
Q  4 ataagacactgacaaatgctcagataatctggtgaaggaagcttttgaaatactttaacaaggagatggagaacctgaaca 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44808294 ataagacactgacaaatgctcagataatctggtgaaggaagcttttgaaatactttaacaaggagacggagaacctgaaca 44808214  T

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Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 2231526 - 2231417
Alignment:
Q  133 attaaaatcattaaaatttcaatggaatatagctcaataactaaaattaaaggaatgaaaaaggaagggaagattttccagatatattctgcgcatagac 232  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| ||||||    
T  2231526 attaaaatcataaaaatt-caatggaatatagctcaataactaaaattaaagggatgaaaaaggaagggaagattttccggatatattcagcgtatagac 2231428  T
Q  233 ttcaatataac 243  Q
    |||||||||||    
T  2231427 ttcaatataac 2231417  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 2231776 - 2231697
Alignment:
Q  4 ataagacactgacaaatgctcagataatctggtgaaggaagcttttgaaatactttaacaaggagatggagaacctgaac 83  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  2231776 ataagacactgacaaatgctcagataatctggtgatggaagcttttgaaatactttaacaaggagacggagaacctgaac 2231697  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 135
Target Start/End: Complemental strand, 2231637 - 2231609
Alignment:
Q  107 tcttcataaatatttccagcacaaacatt 135  Q
    |||||||||||||||||||||||||||||    
T  2231637 tcttcataaatatttccagcacaaacatt 2231609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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