View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3515_low_3 (Length: 396)
Name: NF3515_low_3
Description: NF3515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3515_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 21523226 - 21522849
Alignment:
| Q |
1 |
catggttggtcggagcctaggcgaactctgagtgcacagaagggctatcttcagatatttacaagcttcctcgacacaccatccccagtccagtgacgtg |
100 |
Q |
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| T |
21523226 |
catggttggtcggagcctaggcgaactctgagtgcacagaagggaaatcttcagatatttacaagcttcctcgaggcaccatccccagtccagtgatgtg |
21523127 |
T |
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| Q |
101 |
tctaccaactcgaccaattcccttcggttataaagtttccatgtctgtcataagaacataatctttagtcagagctggtctaaaaataccataatgcact |
200 |
Q |
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| T |
21523126 |
tctaccaactcgaccaattcccttcggttataaagtttccatgtctgtcataagaacataatctttagtaagagctggtctaaaaataccataatgcact |
21523027 |
T |
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| Q |
201 |
agaataagattaatattaatgcagtgagtaagcaacaccgagaattttgttttcgtctcgcagcccactggctcggaatgaatgtaaaattagtcatgtg |
300 |
Q |
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| T |
21523026 |
agaataagattaatattaatgcagtgagtaagcaacaccgagaattttgttttcgtctcgcagcccagtggctcagaatgaatgtaaaattagtcatgtg |
21522927 |
T |
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| Q |
301 |
gtgtttcaagatataatgcagaagtacatgtgaaattttatgttagtgcctatacacaaaacaattattaatagggagat |
380 |
Q |
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| T |
21522926 |
gtgtttcaagatttaatgcaaaagtacatgtgaaattttatgttagtgcctatacacaaa--aattattaatagggagat |
21522849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 21517455 - 21517303
Alignment:
| Q |
47 |
atcttcagatatttacaagcttcctcgacacaccatccccagtccagtgacgtgtctaccaactcgaccaattcccttcggttataaagtttccatgtct |
146 |
Q |
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| T |
21517455 |
atcttcagatatttacaagcctcctccacacacaactccttgtttagtgatatgtctatcaactccaccaatttcttttgcttataatgctcccatgtct |
21517356 |
T |
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| Q |
147 |
gtcataagaacataatctttagtcagagc--tggtctaaaaataccataatgc |
197 |
Q |
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| T |
21517355 |
gtaataagaacataatctacaataagagctatggtctaaaaatacgataatgc |
21517303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 21517202 - 21517150
Alignment:
| Q |
301 |
gtgtttcaagatataatgcagaagtacatgtgaaattttatgttagtgcctat |
353 |
Q |
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| T |
21517202 |
gtgtttcaagatataatgcagaagtgcaggtgtaattttattttagtgcctat |
21517150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 322
Target Start/End: Complemental strand, 21530016 - 21529986
Alignment:
| Q |
292 |
agtcatgtggtgtttcaagatataatgcaga |
322 |
Q |
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| T |
21530016 |
agtcatgtggtgtttcaagatataatgcaga |
21529986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 30147277 - 30147330
Alignment:
| Q |
277 |
aatgaatgtaaaattagtcatgtggtgtttcaagatataatgcagaagtacatg |
330 |
Q |
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| T |
30147277 |
aatgaaagtaaaattagttatgtggagtttcaagatataatgcaaaagtacatg |
30147330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 328
Target Start/End: Complemental strand, 51122493 - 51122459
Alignment:
| Q |
294 |
tcatgtggtgtttcaagatataatgcagaagtaca |
328 |
Q |
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| T |
51122493 |
tcatgtggtgtttcaagatataatgcagatgtaca |
51122459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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