View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3516_high_16 (Length: 292)
Name: NF3516_high_16
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3516_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 15087178 - 15087012
Alignment:
| Q |
1 |
tatgaatataaacctaaccctatgtttatcaattgtcatctatacatgatttaaaccataacctttaagtaacaagttgatgtctctcacttactaactc |
100 |
Q |
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| T |
15087178 |
tatgaatataaacctaaccctatgtttatcaattagcatttatacatgatttaaaccatatcccttaggtaacaagttgatggctcgcacttactaactt |
15087079 |
T |
|
| Q |
101 |
aaaatatcgtttgtggattgaacatcaacaaaaacattaagaacaaatttaacaggaaaattgtatt |
167 |
Q |
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| T |
15087078 |
aaaatatcttttatggattgaacatcagcaaaagcattaagaacaaatttaacataaagattgtatt |
15087012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 9965558 - 9965481
Alignment:
| Q |
195 |
taactaacaaagaagagagggattatgttggtgaagcatccacaaccttgaa-ccaagctccaaagcttcccaatggt |
271 |
Q |
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| T |
9965558 |
taactaacaaagaagagatgaattgtgttggtgaaacaccgagaagctttaatccaagctccaaagcttcctaatggt |
9965481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 8934165 - 8934014
Alignment:
| Q |
1 |
tatgaatataaacctaaccctatgtttatcaattgtcatctatacatgatttaaaccataacctttaagtaacaagttgatgtctctcacttactaactc |
100 |
Q |
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| T |
8934165 |
tatgaatataaacttaaccctatgtctggcaattagtatttatacatgatttgaaccaactcccttaagtaacaagtcgttgtatcacacttgctaaatc |
8934066 |
T |
|
| Q |
101 |
aaaatatcgtttgtggattgaacatcaacaaaaacattaagaacaaatttaa |
152 |
Q |
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| T |
8934065 |
aaaatatcgtttttggattgcacatcgacaaaagcattaaaaacatatttaa |
8934014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 18291478 - 18291622
Alignment:
| Q |
1 |
tatgaatataaacctaaccctatgtttatcaattgtcatctatacatgatttaaaccataacctttaagtaacaagttgatgtctctcacttactaactc |
100 |
Q |
| |
|
||||||||||||| ||||| ||||| || ||||| ||||||||| | ||||||||| | || | ||||||||||| ||||||| || || ||| || |
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| T |
18291478 |
tatgaatataaacttaaccttatgtctagcaattaacatctatacgttatttaaaccttgtccctcaagtaacaagtcgatgtcttgcatttgttaaatc |
18291577 |
T |
|
| Q |
101 |
aaaatatcgtttgtggattgaacatcaacaaaaacattaagaaca |
145 |
Q |
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| T |
18291578 |
aaaatatcgtttgcagattacatatcgacaaaaacattaagaaca |
18291622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 29446470 - 29446394
Alignment:
| Q |
38 |
atctatacatgatttaaaccataacctttaagtaacaagttgatgtctctcacttactaactcaaaatatcgtttgt |
114 |
Q |
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| T |
29446470 |
atctatacatggtttaaacaagatcccttaagtaacaagtcgatgtctcacacctactaaatcaaaatatcgtttgt |
29446394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 40743617 - 40743545
Alignment:
| Q |
41 |
tatacatgatttaaaccataacc-tttaagtaacaagttgatgtctctcacttactaactcaaaatatcgttt |
112 |
Q |
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|||||||||||||||||| | || |||||| ||||||| ||||||| ||||| |||| |||||||||||||| |
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| T |
40743617 |
tatacatgatttaaaccagatccctttaagcaacaagtcaatgtctcgcacttgctaaatcaaaatatcgttt |
40743545 |
T |
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