View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3516_high_18 (Length: 263)
Name: NF3516_high_18
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3516_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 1018651 - 1018900
Alignment:
| Q |
1 |
caaaattttgccgggctgtaaattttaagcaccttttcctgactactaaactaccttttataataattgagttttcttgtgcaggataactacctggtaa |
100 |
Q |
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| T |
1018651 |
caaaattttgccgggctgtaaattttaagcaccttttcctgactactaaactaccttttataataattgagttttcttgtgcaggataactacctggtaa |
1018750 |
T |
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| Q |
101 |
cctatgacaacaaaactaaatcttcaaaaagatcatttagatctaagtccttcatagggctatcaaaacattatatggattcaaaagaaagacatgaatt |
200 |
Q |
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| T |
1018751 |
cctatgacaacaaaactaaatcttcaaaaagatcatttagatctaagtccttcatagggctatcaaaacattatatggattcaaaagaaagacatgaatt |
1018850 |
T |
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| Q |
201 |
tcttttagaaaacaactactaatttattcttcgtgtgtgcctccttccct |
250 |
Q |
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| T |
1018851 |
tcttttagaaaacaactactaatttattcttcgtgtgtgcctccttccct |
1018900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 1014159 - 1014279
Alignment:
| Q |
30 |
caccttttcctgactactaaactaccttttataataattgagttttc-ttgtgcaggataactacctggtaacctatgacaacaaaactaaatcttcaaa |
128 |
Q |
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| T |
1014159 |
caccttttcctacctactaaaccaccctttataataacttattattccttgcccagcttaactgcctagtaacctatgacaacaaaaccaaatcttcaaa |
1014258 |
T |
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| Q |
129 |
aagatcatttagatctaagtc |
149 |
Q |
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| T |
1014259 |
cagatcatttagatctaagtc |
1014279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 1010115 - 1010161
Alignment:
| Q |
103 |
tatgacaacaaaactaaatcttcaaaaagatcatttagatctaagtc |
149 |
Q |
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| T |
1010115 |
tatgacaacaaaaccaaatctataaacagatcatttagatctaagtc |
1010161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 88 - 250
Target Start/End: Complemental strand, 8317178 - 8317016
Alignment:
| Q |
88 |
aactacctggtaacctatgacaacaaaactaaatcttcaaaaagatcatttagatctaagtccttcatagggctatcaaaacattatatggattcaaaag |
187 |
Q |
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| T |
8317178 |
aactacctggtaacctatgacagcaaaactaaatcttcaaaaagatcatttagatctaagtccttcatagcgctatcaaaacattatatggattcaaaag |
8317079 |
T |
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| Q |
188 |
aaagacatgaatttcttttagaaaacaactactaatttattcttcgtgtgtgcctccttccct |
250 |
Q |
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| T |
8317078 |
aaagacatgaatttcttttagaaaacaactactaatttattcttcgtgtgtgcgtccttccct |
8317016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 8317226 - 8317171
Alignment:
| Q |
1 |
caaaattttgccgggctgtaaattttaagcaccttttcctgactactaaactacct |
56 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8317226 |
caaaattttgccgggcagtaaattttaagcaccttttcctgactactaaactacct |
8317171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 40638733 - 40638687
Alignment:
| Q |
97 |
gtaacctatgacaacaaaactaaatcttcaaaaagatcatttagatc |
143 |
Q |
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| T |
40638733 |
gtaacctatgacaacaaaaccaaatctccaaacagatcatttagatc |
40638687 |
T |
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