View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3516_high_21 (Length: 252)
Name: NF3516_high_21
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3516_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 52995274 - 52995493
Alignment:
| Q |
14 |
atgaacaacgatgactgttcttgatggaactataacagaaacctctttgacaccttgaagaggtttgagaatgttttcaatcagaggtacctctgaggaa |
113 |
Q |
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| T |
52995274 |
atgaacaacgatgactgttcttgatggaactataacagaaacctctttgacaccttgaagaggtttgagaatgttttcaatcagaggtacctctgaggaa |
52995373 |
T |
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| Q |
114 |
caacataatcccaccacatcaaagtagcttttttgcaactttttccctccttcagaagaagacatcttgatcactacaattttgatcacctaattaatta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52995374 |
caacataatcccaccacatcaaagtagcttttttgcaactttttccctccttcagaagaagacatcttgatcactacaattttgatcacctaattaatta |
52995473 |
T |
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| Q |
214 |
gaccaaaatgaaaataattt |
233 |
Q |
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|||||||||||||||||||| |
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| T |
52995474 |
gaccaaaatgaaaataattt |
52995493 |
T |
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