View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3516_high_23 (Length: 250)
Name: NF3516_high_23
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3516_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 8544496 - 8544248
Alignment:
| Q |
1 |
ttgttatttatgataatttgtttagactccattaatctgaaaacgtccataacaaactgcagcaggaattgaaatgttgaaataaataaaatagagagag |
100 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8544496 |
ttgttatttatggtaatttgtttaaactccattaatctgaaaacgtccataacaaactgcagcaggaattgaaatgttgaaataaataaaatagagagag |
8544397 |
T |
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| Q |
101 |
caggaggtagataatgaatg---------------agattagatacataccagtggatcaggagattctaaacagtaattaaagataggaagaaaatgat |
185 |
Q |
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| T |
8544396 |
caggaggtagataatgaatgagtgagcattagattagaatagatacataccagtggatcaggagattgtaaacagtaattaaagataggaagaaaatgat |
8544297 |
T |
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| Q |
186 |
tggaggataatgagtggggggttgtattagcaaaatggagcagtaagtg |
234 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8544296 |
tggcggataatgagtggggggttgtattagcaaaatggagcagtaagtg |
8544248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 8609735 - 8609487
Alignment:
| Q |
1 |
ttgttatttatgataatttgtttagactccattaatctgaaaacgtccataacaaactgcagcaggaattgaaatgttgaaataaataaaatagagagag |
100 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8609735 |
ttgttatttatggtaatttgtttaaactccattaatctgaaaacgtccataacaaactgcagcaggaattgaaatgttgaaataaataaaatagagagag |
8609636 |
T |
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| Q |
101 |
caggaggtagataatgaatg---------------agattagatacataccagtggatcaggagattctaaacagtaattaaagataggaagaaaatgat |
185 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8609635 |
caggaggtagataatgaatgagtgagcattagattagaatagatacataccagtggatcaggagattgtaaacagtaattaaagataggaagaaaatgat |
8609536 |
T |
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| Q |
186 |
tggaggataatgagtggggggttgtattagcaaaatggagcagtaagtg |
234 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8609535 |
tggcggataatgagtggggggttgtattagcaaaatggagcagtaagtg |
8609487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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