View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3516_high_3 (Length: 768)

Name: NF3516_high_3
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3516_high_3
NF3516_high_3
[»] chr3 (5 HSPs)
chr3 (373-746)||(33991088-33991461)
chr3 (1-310)||(33990716-33991025)
chr3 (26-56)||(1116401-1116431)
chr3 (22-59)||(4216083-4216120)
chr3 (4-57)||(35335587-35335640)
[»] chr5 (4 HSPs)
chr5 (396-456)||(18854946-18855006)
chr5 (238-306)||(18855231-18855299)
chr5 (653-734)||(18854765-18854846)
chr5 (24-60)||(6760514-6760550)
[»] chr4 (6 HSPs)
chr4 (238-308)||(42868453-42868523)
chr4 (1-42)||(7367536-7367577)
chr4 (653-734)||(42867922-42868003)
chr4 (5-53)||(43843634-43843682)
chr4 (494-532)||(41571464-41571502)
chr4 (399-453)||(42868177-42868231)
[»] chr1 (2 HSPs)
chr1 (1-60)||(3523374-3523433)
chr1 (11-53)||(52156777-52156819)
[»] chr7 (1 HSPs)
chr7 (22-60)||(438696-438734)
[»] chr2 (1 HSPs)
chr2 (494-532)||(26004210-26004248)
[»] chr6 (2 HSPs)
chr6 (25-58)||(4323114-4323147)
chr6 (15-52)||(32926315-32926352)


Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 373 - 746
Target Start/End: Original strand, 33991088 - 33991461
Alignment:
Q  373 acaatatttgatgtttatttatatttcagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagtatgttctaatctgtacataa 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991088 acaatatttgatgtttatttatatttcagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagtatgttctaatctgtacataa 33991187  T
Q  473 atatgatcaatagtctctaatgtatataaaatccttcaatttagtccctgctattaagattcatatgtcaaagactaaattacaggatttcatacacttt 572  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  33991188 atatgataaatagtctctaatgtatataaaatccttcaatttagtccctgctattaagattcagatgtcaaagactaaattgcaggatttcatacacttt 33991287  T
Q  573 agaaactgaattgacggatgtcatttactttaattgctgcatgcttgattaacaaatgcaaattttcttagggggcaagtgaattggaaggtttagaaga 672  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991288 agaaactgaattgactgatgtcatttactttaattgctgcatgcttgattaacaaatgcaaattttcttagggggcaagtgaattggaaggtttagaaga 33991387  T
Q  673 gaaggcaaaagccagcggagcttctcagttagtcgtgaaggatttgaaggaggaatttgttagggattatgtat 746  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991388 gaaggcaaaagccagcggagcttctcagttagtcgtgaaggatttgaaggaggaatttgttagggattatgtat 33991461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 33990716 - 33991025
Alignment:
Q  1 cacgacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatgtaaaccattggtcagtgtcatacaccagaatccagatatgttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33990716 cacgacactaacacatagacgccaataataatttgagaaaattgaagtgcttaaatgtaaaccatgggtcagtgtcatacaccagaatccagatatgttc 33990815  T
Q  101 agtgttatctgataattgagttttaagtttaatgtctctaacagtgaagttttattgaaatgcagttataaaagctgtgctatataaagacgttgaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33990816 agtgttatctgataattgagttttaagtttaatgtctctaacagtgaagttttattgaaatgcagttataaaagctgtgctatataaagacgtagaaatt 33990915  T
Q  201 tctgagaccaagaaggttgctggactaaaaggtaaactgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggctga 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33990916 tctgagaccaagaaggttgctggactaaaaggtaaattgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggctga 33991015  T
Q  301 ggtatataaa 310  Q
    ||||||||||    
T  33991016 ggtatataaa 33991025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 56
Target Start/End: Original strand, 1116401 - 1116431
Alignment:
Q  26 taataatttgagaaaattgaagtgattaaat 56  Q
    |||||||||||||||||||||||||||||||    
T  1116401 taataatttgagaaaattgaagtgattaaat 1116431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 4216120 - 4216083
Alignment:
Q  22 ccaataataatttgagaaaattgaagtgattaaatgta 59  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  4216120 ccaataataattaaagaaaattgaagtgattaaatgta 4216083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 35335587 - 35335640
Alignment:
Q  4 gacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatg 57  Q
    |||||| |||||||||| | | |||||||||||||||||  |||||||||||||    
T  35335587 gacactgacacatagacactagtaataatttgagaaaatgaaagtgattaaatg 35335640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 396 - 456
Target Start/End: Complemental strand, 18855006 - 18854946
Alignment:
Q  396 tttcagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagtatgt 456  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  18855006 tttcagagagaattatggctgtgatgttgtttgcttcactgctgatgttggccaagtatgt 18854946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 18855299 - 18855231
Alignment:
Q  238 tgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggctgaggtata 306  Q
    |||||||||||||  ||||||| || ||||||||||||||||||||  ||||||| |||||||||||||    
T  18855299 tgaataaggttgtattggcttacagcggtggcttagacacatcggtcattgtcccatggctgaggtata 18855231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 653 - 734
Target Start/End: Complemental strand, 18854846 - 18854765
Alignment:
Q  653 gaattggaaggtttagaagagaaggcaaaagccagcggagcttctcagttagtcgtgaaggatttgaaggaggaatttgtta 734  Q
    |||||||| ||||||||||  || || ||| |||| || || ||||| |||||||| ||||| |||||||||||||||||||    
T  18854846 gaattggacggtttagaagctaaagccaaatccagtggggcatctcaattagtcgtaaaggacttgaaggaggaatttgtta 18854765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 6760550 - 6760514
Alignment:
Q  24 aataataatttgagaaaattgaagtgattaaatgtaa 60  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6760550 aataataatttgagaaaatttaagtgattaaatgtaa 6760514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 42868523 - 42868453
Alignment:
Q  238 tgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggctgaggtatata 308  Q
    ||||||||||||| || ||||| |||||||||||||||||||| ||  ||||||| ||| |||||||||||    
T  42868523 tgaataaggttgtacttgcttacagtggtggcttagacacatcagtcattgtcccatggttgaggtatata 42868453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7367536 - 7367577
Alignment:
Q  1 cacgacactaacacatagacgccaataataatttgagaaaat 42  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  7367536 cacgacactaacacatagacaccaataataatttgagaaaat 7367577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 653 - 734
Target Start/End: Complemental strand, 42868003 - 42867922
Alignment:
Q  653 gaattggaaggtttagaagagaaggcaaaagccagcggagcttctcagttagtcgtgaaggatttgaaggaggaatttgtta 734  Q
    |||||||| ||||| ||||  || ||||||||||| ||||| || || |||||||| ||||| |||||||||||||||||||    
T  42868003 gaattggatggtttggaagccaaagcaaaagccagtggagcctcccaattagtcgtaaaggacttgaaggaggaatttgtta 42867922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 43843682 - 43843634
Alignment:
Q  5 acactaacacatagacgccaataataatttgagaaaattgaagtgatta 53  Q
    |||||||||| ||||| |||||||||||||||||||||  |||||||||    
T  43843682 acactaacacgtagacaccaataataatttgagaaaataaaagtgatta 43843634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 494 - 532
Target Start/End: Complemental strand, 41571502 - 41571464
Alignment:
Q  494 gtatataaaatccttcaatttagtccctgctattaagat 532  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  41571502 gtatataaaatccgtcaacttagtccctgctattaagat 41571464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 399 - 453
Target Start/End: Complemental strand, 42868231 - 42868177
Alignment:
Q  399 cagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagta 453  Q
    ||||||||| || || ||||||||||| ||||||||||||||| | |||||||||    
T  42868231 cagagagaattacggttgtgatgttgtgtgcttcactgctgatgttggccaagta 42868177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3523374 - 3523433
Alignment:
Q  1 cacgacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatgtaa 60  Q
    ||||||||| |||| ||||| || |||||||||||| ||||| ||||||||| |||||||    
T  3523374 cacgacactgacacgtagacaccgataataatttgataaaatagaagtgattgaatgtaa 3523433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 52156819 - 52156777
Alignment:
Q  11 acacatagacgccaataataatttgagaaaattgaagtgatta 53  Q
    |||||||||||| |||||||| |||||||||| ||||||||||    
T  52156819 acacatagacgctaataataacttgagaaaatggaagtgatta 52156777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 438734 - 438696
Alignment:
Q  22 ccaataataatttgagaaaattgaagtgattaaatgtaa 60  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  438734 ccaataataatttaagaaaattgaagtaattaaatgtaa 438696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 494 - 532
Target Start/End: Original strand, 26004210 - 26004248
Alignment:
Q  494 gtatataaaatccttcaatttagtccctgctattaagat 532  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  26004210 gtatataaaatccatcaatttagtccctgatattaagat 26004248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 4323114 - 4323147
Alignment:
Q  25 ataataatttgagaaaattgaagtgattaaatgt 58  Q
    |||| |||||||||||||||||||||||||||||    
T  4323114 ataacaatttgagaaaattgaagtgattaaatgt 4323147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 32926352 - 32926315
Alignment:
Q  15 atagacgccaataataatttgagaaaattgaagtgatt 52  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  32926352 atagacaccaataataatttaagaaaattgaagtgatt 32926315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University