View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3516_low_1 (Length: 903)

Name: NF3516_low_1
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3516_low_1
NF3516_low_1
[»] chr7 (2 HSPs)
chr7 (56-888)||(13885148-13885959)
chr7 (54-99)||(1220153-1220198)
[»] chr3 (1 HSPs)
chr3 (196-443)||(29091915-29092162)
[»] chr8 (2 HSPs)
chr8 (767-886)||(37191319-37191439)
chr8 (767-884)||(22518004-22518121)
[»] chr1 (1 HSPs)
chr1 (56-99)||(31913648-31913691)
[»] chr6 (1 HSPs)
chr6 (769-855)||(33457169-33457255)


Alignment Details
Target: chr7 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 56 - 888
Target Start/End: Complemental strand, 13885959 - 13885148
Alignment:
Q  56 gagatgtgaacgaattagggttcatgagggaaaaaatcgaattatcgatgattcgagtttttcaaagatgaaagaagttgctgttgtaactaaaatcaac 155  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13885959 gagatgtgaaccaattagggttcatgagggaaataatcgaattatcaatgattcgagtttttcaaagatgaaagaagttgctgttgtaactaaaatcaac 13885860  T
Q  156 gagaataataaaaactcagatgacacctctcaatttactcaggttcatagcgtatgtgcaagtcctgctttttcacttttagaaccgtgtttttctgatg 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13885859 gagaataataaaaactcagatgacacctctcaatttactcaggttcgtagcgtatgtgcaagtcctgctttttcactttcagaaccgtgtttttctgatg 13885760  T
Q  256 gcttcacatataaatctgacttttattcatcggcaacatccctttctagcatttatggcataactgacaattcaacaccaagctctccatatattaattc 355  Q
    |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| | ||||| |||||||||||||||||    
T  13885759 gcttgacatataaatctgacttttattcatcgacaacatccctctctagcatttatggcataacagacaattcagccccaagttctccatatattaattc 13885660  T
Q  356 tgatattcatagcaatatcaaaacatctcgttttgaaaaagagtacaagaaggaattgtcatcaaataggtctaacataccacctgccaacaacacataa 455  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||    
T  13885659 tgatattcgtagcaatatcaaaacatctcgttttgaaaaagagtacaagaaggaattgtcatcaaataggtctaacataccacctg------------aa 13885572  T
Q  456 gtcccactatcggaggaacatgaagaggaagttcgcgacattgtcgaagtttctcaaccatcttctgtttcgccaccaattctcactgattcaatactgt 555  Q
    ||| ||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||  |  ||||||||| ||| |||||||||     
T  13885571 gtctcactatcggaggaatgtgaagaggaagttcacgacattgtcgaagtttctcaaccatcttctgtttcaacggcaattctcattgaatcaatactgc 13885472  T
Q  556 tcggcaaaggtgacattgaaaattcacaaggtgattcccaacgatctctgataccagcaaaacatgtagaagataatgaaattgttgaagattctgagga 655  Q
    ||||         ||||||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13885471 tcgg---------cattgaaaattcacagggtgattcccaacaatctcggatcccagcaaaacatgtagaagataatgaaattgttgaagattctgagga 13885381  T
Q  656 atctttcatttgtaaacaacaaacgccgtggtcaaacttcaaattcacctatcaagagattgccaacactcttccaataggaacgaatgtctatttagaa 755  Q
    |||||||| ||||||||||||||||||| |||||||||||| |||||||  ||||||||||||||||||||||||||||||||||| | |||||| | ||    
T  13885380 atctttcagttgtaaacaacaaacgccgaggtcaaacttcagattcacccgtcaagagattgccaacactcttccaataggaacgactttctattcaaaa 13885281  T
Q  756 caacaattgggtgaggtaaaatttcaatcactctcacctaaccacttcaatgtgtttgcacaatcagttccgttaagctttgactgtctcaaatgtttcg 855  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  13885280 caacaattgggtgaggtaaaatttcaattactttcacctaaccacttcaatgtgtttgcacaatcagttctgttaagcttcgactgtctcaaatgtttcg 13885181  T
Q  856 atcccggtggattgatgccgctgtcgtttctga 888  Q
    |||||||||||| ||||||||||||||| ||||    
T  13885180 atcccggtggatcgatgccgctgtcgttgctga 13885148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 1220198 - 1220153
Alignment:
Q  54 aggagatgtgaacgaattagggttcatgagggaaaaaatcgaatta 99  Q
    ||||||||||||| ||||||| ||||||| ||||| ||||||||||    
T  1220198 aggagatgtgaaccaattaggtttcatgacggaaacaatcgaatta 1220153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 196 - 443
Target Start/End: Original strand, 29091915 - 29092162
Alignment:
Q  196 aggttcatagcgtatgtgcaagtcctgctttttcacttttagaaccgtgtttttctgatggcttcacatataaatctgacttttattcatcggcaacatc 295  Q
    |||| |||||||| |||||||||||| |||| ||||||| ||||| |||||||||||| |||||  ||||||||||||| ||||||||||| |   | ||    
T  29091915 aggtacatagcgtgtgtgcaagtcctactttgtcactttcagaacggtgtttttctgacggcttgtcatataaatctgaattttattcatcagtgtcgtc 29092014  T
Q  296 cctttctagcatttatggcataactgacaattcaacaccaagctctccatatattaattctgatattcatagcaatatcaaaacatctcgttttgaaaaa 395  Q
    ||| || |||||| ||||||| || |||||||||   ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||    
T  29092015 cctctccagcattcatggcatgacagacaattcagtcccaagttctccatatattaatccagatattcatagcaatatcaaaacatctcgtttcgaaaaa 29092114  T
Q  396 gagtacaagaaggaattgtcatcaaataggtctaacataccacctgcc 443  Q
    ||||||||||||||||||||||||||||| |||| ||| || ||||||    
T  29092115 gagtacaagaaggaattgtcatcaaatagatctatcatgcctcctgcc 29092162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 8e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 767 - 886
Target Start/End: Original strand, 37191319 - 37191439
Alignment:
Q  767 tgaggtaaaatttcaatcactctcacctaaccacttcaatgtgtttgcacaatcagttccgttaagctttgactgtctcaaatgtttcgatcccggtgga 866  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  ||||    
T  37191319 tgaggtaaaatttcaatcactctcacctaaccacttcaatgtgtttgcacaatcagttccgctaagcttcgactgtctcaaatgtttcgatccccatgga 37191418  T
Q  867 ttga-tgccgctgtcgtttct 886  Q
    |||| | ||||||||||||||    
T  37191419 ttgatttccgctgtcgtttct 37191439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 767 - 884
Target Start/End: Complemental strand, 22518121 - 22518004
Alignment:
Q  767 tgaggtaaaatttcaatcactctcacctaaccacttcaatgtgtttgcacaatcagttccgttaagctttgactgtctcaaatgtttcgatcccggtgga 866  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||    
T  22518121 tgaggtaaaatttcaatcactctcatctaaccacttccaagtgtttgcacaatcaattcctttaagcttcgactgtctcaaatgtttcgatcccggtgga 22518022  T
Q  867 ttgatgccgctgtcgttt 884  Q
    | ||| ||||| ||||||    
T  22518021 tcgataccgctttcgttt 22518004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 31913648 - 31913691
Alignment:
Q  56 gagatgtgaacgaattagggttcatgagggaaaaaatcgaatta 99  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||    
T  31913648 gagatgtgaaccaattagggttcatgatggaaacaatcgaatta 31913691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 855
Target Start/End: Original strand, 33457169 - 33457255
Alignment:
Q  769 aggtaaaatttcaatcactctcacctaaccacttcaatgtgtttgcacaatcagttccgttaagctttgactgtctcaaatgtttcg 855  Q
    ||||||||||| |||||||||| ||||||   |||||||||| | || ||||| |||| ||||| || |||| | ||||||||||||    
T  33457169 aggtaaaattttaatcactctcgcctaacacattcaatgtgtcttcataatcaattcctttaaggttggactctgtcaaatgtttcg 33457255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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