View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3516_low_11 (Length: 332)
Name: NF3516_low_11
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3516_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 158 - 324
Target Start/End: Complemental strand, 4803883 - 4803717
Alignment:
| Q |
158 |
ggttgcatctcatttccattccttggaatatatgtatgttcaagggatttgtcatacaacgagttggaagggcctttgccagaatttctagcacatttgc |
257 |
Q |
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| T |
4803883 |
ggttgcatctcatttccattcctttgaatatatgtatgatcaagggatttgtcgtacaacgagttggaagggtctttgccagaatttctagcacatttgc |
4803784 |
T |
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| Q |
258 |
cgaacctaaaagttctgtaagtttgaaatttctcccttaggagctcatattaattttgtttttgttt |
324 |
Q |
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| T |
4803783 |
caaagttaaaagttctgtaagtttgaactttctcagttaggagctcatattatttttgtttttgttt |
4803717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 164 - 324
Target Start/End: Complemental strand, 4848937 - 4848777
Alignment:
| Q |
164 |
atctcatttccattccttggaatatatgtatgttcaagggatttgtcatacaacgagttggaagggcctttgccagaatttctagcacatttgccgaacc |
263 |
Q |
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| T |
4848937 |
atctcatttccattcctttgaatatatgtatgttcaagggatttgtcgtacaatgaattggaaggacctttgccagaatttctagcacatttgccaaatt |
4848838 |
T |
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| Q |
264 |
taaaagttctgtaagtttgaaatttctcccttaggagctcatattaattttgtttttgttt |
324 |
Q |
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| T |
4848837 |
taaaagttctgtaagttttaaatttatcattttggagctcatcttatttttgtttttgttt |
4848777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 4849058 - 4848937
Alignment:
| Q |
15 |
agataaacatttcattctcatatcttacagaactagaatctctgtgagtggtaaattatttttgtttattcatttctttttatgtttgaacatcataaat |
114 |
Q |
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| T |
4849058 |
agataaacatttcattctcatatcttacagaactagaatttctgtgagtagtaaattattattgtttattcatttccttttatgtttgaacattataaat |
4848959 |
T |
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| Q |
115 |
acttaaccattgtttcaatgaa |
136 |
Q |
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|||||| |||||||||| |||| |
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| T |
4848958 |
acttaaacattgtttcattgaa |
4848937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 186 - 292
Target Start/End: Complemental strand, 4793482 - 4793376
Alignment:
| Q |
186 |
tatatgtatgttcaagggatttgtcatacaacgagttggaagggcctttgccagaatttctagcacatttgccgaacctaaaagttctgtaagtttgaaa |
285 |
Q |
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||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| |
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| T |
4793482 |
tatatgtgtgttcaagggatttgtcaaacaacgagttggaagggcctttgccagaatttctagcacacttgccaaatttaaaagttctgtaagtttgaaa |
4793383 |
T |
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| Q |
286 |
tttctcc |
292 |
Q |
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||||||| |
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| T |
4793382 |
tttctcc |
4793376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 4828943 - 4828841
Alignment:
| Q |
186 |
tatatgtatgttcaagggatttgtcatacaacgagttggaagggcctttgccagaatttctagcacatttgccgaacctaaaagttctgtaagtttgaaa |
285 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||| |||| || |||||||||||||||||||||| |
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| T |
4828943 |
tatatgtatgttcaagggatttgtctcacaacgagttggaaggacatttgccagaatttctagcacatctgccaaagttaaaagttctgtaagtttgaaa |
4828844 |
T |
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| Q |
286 |
ttt |
288 |
Q |
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||| |
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| T |
4828843 |
ttt |
4828841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 4803988 - 4803893
Alignment:
| Q |
14 |
gagataaacatttcattctcatatcttacagaactagaatctctgtgagtggtaaattat---ttttgtttattcatttctttttatgtttgaaca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| | |||||||||||||| ||||| |||| ||||| |
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| T |
4803988 |
gagataaacatttcattctcatatcttacagaactagaatttctgtgagtagtagattattactattgtttattcatttatttttctgttcgaaca |
4803893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 4793694 - 4793579
Alignment:
| Q |
14 |
gagataaacatttcattctcatatcttacagaactagaatctctgtgagtggtaaattatttttgtttattcatttctttttatgtttgaacatcataaa |
113 |
Q |
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|||||||| |||| ||||| ||||||||||||||| ||| ||||||||| |||| ||||| |||| ||||||||||||||||||| || || ||||| |
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| T |
4793694 |
gagataaatatttggttctcgtatcttacagaactaaaatttctgtgagtagtaa-ttattgttgtg-attcatttctttttatgttcaaatattataaa |
4793597 |
T |
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| Q |
114 |
tacttaaccattgtttca |
131 |
Q |
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||||||| |||||||||| |
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| T |
4793596 |
tacttaatcattgtttca |
4793579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 4829338 - 4829289
Alignment:
| Q |
14 |
gagataaacatttcattctcatatcttacagaactagaatctctgtgagt |
63 |
Q |
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|||||||| |||||||| ||||||||||||||||| |||||||||||||| |
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| T |
4829338 |
gagataaatatttcattttcatatcttacagaactggaatctctgtgagt |
4829289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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