View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3516_low_13 (Length: 308)
Name: NF3516_low_13
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3516_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 45168313 - 45168042
Alignment:
| Q |
16 |
atccatattcaatactaaaatgtttagataaacattgttgttgattatgaacatcaaccttttgaaaaatagcataaacaaaaattgattactttaaaat |
115 |
Q |
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| T |
45168313 |
atccatattcaatactaaaatgtttaaataaacattgttgttaattatgaacatcaaccttttgaaaaatagcataaacaaaaattgattactttaaaat |
45168214 |
T |
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| Q |
116 |
aggatcactaaaagaaaggtccttttgaattatacaacaacacctacaatatgagacaaacaacatttatcaaattgtaacaatgcccgaagaactcgca |
215 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45168213 |
aggatcactaaaagaaaggtctttttgaattatacaacaacacctacaatctgaggc-aacaacatttatcaaattgtaacagtgcccgaagaactcgca |
45168115 |
T |
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| Q |
216 |
ctccaactcataacatgcttggaaggtgatattagatataggtatgtgatctatgcatatatatcaccactcatc |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45168114 |
ctccaactcataacatgcttggaaggtgatattagatataggtatgtgatctatgc--atatatcaccactcatc |
45168042 |
T |
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