View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3516_low_14 (Length: 302)
Name: NF3516_low_14
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3516_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 23 - 299
Target Start/End: Original strand, 1384086 - 1384362
Alignment:
| Q |
23 |
taggtgtggcctcctattggcaagaagaagtttgagactctttcataccttccaccattgaccagagaacaattggcgaaagaagttgaataccttataa |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1384086 |
taggtgtggcctcctattggcaagaagaagtttgagactctttcataccttccaccattgaccagagaacaattggcgaaagaagttgaataccttataa |
1384185 |
T |
|
| Q |
123 |
ggaagggatgggttgcttgcttggaattcgagactgaggtctagttttaatttattttcaatgccttttcaacgaacatatatatagttttgaacttaga |
222 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1384186 |
ggaagggatgggttgcttgcttggaattcgagaccgaggtctagttttaatttattttcaatgccttttcaacgaacatatatatagttttgaacttaga |
1384285 |
T |
|
| Q |
223 |
tggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggata |
299 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1384286 |
tggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggata |
1384362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 23 - 299
Target Start/End: Original strand, 1390191 - 1390467
Alignment:
| Q |
23 |
taggtgtggcctcctattggcaagaagaagtttgagactctttcataccttccaccattgaccagagaacaattggcgaaagaagttgaataccttataa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1390191 |
taggtgtggcctcctattggcaagaagaagtttgagactctttcataccttccaccattgaccagagaacaattggcgaaagaagttgaataccttataa |
1390290 |
T |
|
| Q |
123 |
ggaagggatgggttgcttgcttggaattcgagactgaggtctagttttaatttattttcaatgccttttcaacgaacatatatatagttttgaacttaga |
222 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1390291 |
ggaagggatgggttgcttgcttggaattcgagaccgaggtctagttttaatttattttcaatgccttttcaacgaacatatatatagttttgaacttaga |
1390390 |
T |
|
| Q |
223 |
tggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggata |
299 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1390391 |
tggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggata |
1390467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 23 - 299
Target Start/End: Original strand, 1350432 - 1350708
Alignment:
| Q |
23 |
taggtgtggcctcctattggcaagaagaagtttgagactctttcataccttccaccattgaccagagaacaattggcgaaagaagttgaataccttataa |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350432 |
taggtgtggcctcctattggcaagaagaagtttgagactctttcatatcttccaccattgaccagagaacaattggcgaaagaagttgaataccttataa |
1350531 |
T |
|
| Q |
123 |
ggaagggatgggttgcttgcttggaattcgagactgaggtctagttttaatttattttcaatgccttttcaacgaacatatatatagttttgaacttaga |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350532 |
ggaagggatgggttgcttgcttggaattcgagaccgaggtctagttttaatttattttcaatgccttttcaacgaacatatatatagttttgaacttaga |
1350631 |
T |
|
| Q |
223 |
tggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggata |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1350632 |
tggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggata |
1350708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 1394431 - 1394716
Alignment:
| Q |
17 |
actatataggtgtggcctcctattggcaagaagaagtttgagactctttcataccttccaccattgaccagagaacaattggcgaaagaagttgaatacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1394431 |
actatataggtgtggcctcctattggcaagaagaagtttgagactctttcatatcttccaccattgaccagagaacaattggcgaaagaagttgaatacc |
1394530 |
T |
|
| Q |
117 |
ttataaggaagggatgggttgcttgcttggaattcgagactgaggtctagttttaatttattttcaatgccttttcaacgaacatatatatagttttgaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
1394531 |
ttataaggaagggatgggttgcttgcttggaattcgagaccgaggtctagttttaatttattttcaatgccttttcaatgaacatatatatagttttaaa |
1394630 |
T |
|
| Q |
217 |
cttagatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatacta |
302 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1394631 |
cttaaatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatacta |
1394716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 23 - 302
Target Start/End: Original strand, 1358338 - 1358617
Alignment:
| Q |
23 |
taggtgtggcctcctattggcaagaagaagtttgagactctttcataccttccaccattgaccagagaacaattggcgaaagaagttgaataccttataa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
1358338 |
taggtgtggcctcctattggcaagaagaagtttgagacactttcataccttccaccattgaccagagaacaattggccaaagaagttgaataccttataa |
1358437 |
T |
|
| Q |
123 |
ggaagggatgggttgcttgcttggaattcgagactgaggtctagttttaatttattttcaatgccttttcaacgaacatatatatagttttgaacttaga |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
1358438 |
ggaagggatgggttgcttgcttggaattcgagaccgaggtctagttttaatttattttcaatgccttttcaatgaacatatatatagttttgaatttaga |
1358537 |
T |
|
| Q |
223 |
tggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatacta |
302 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1358538 |
tggttaattggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatacta |
1358617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 1373725 - 1373867
Alignment:
| Q |
23 |
taggtgtggcctcctattggcaagaagaagtttgagactctttcataccttccaccattgaccagagaacaattggcgaaagaagttgaataccttataa |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1373725 |
taggtgtggcctcctattggcaagaagaagtttgagactctttcatatcttccaccattgaccagagaacaattggcgaaagaagttgaataccttataa |
1373824 |
T |
|
| Q |
123 |
ggaagggatgggttgcttgcttggaattcgagactgaggtcta |
165 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
1373825 |
ggaagggatgggttgcttgcttggaatttgagaccgaggtcta |
1373867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 1374117 - 1374169
Alignment:
| Q |
250 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatacta |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1374117 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatacta |
1374169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 7009741 - 7009868
Alignment:
| Q |
23 |
taggtgtggcctcctattggcaagaagaagtttgagactctttcataccttccaccattgaccagagaacaattggcgaaagaagttgaataccttataa |
122 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||| || ||||| ||||||||||| | |
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| T |
7009741 |
taggtgtggccaccaattggcaagaagaagtttgagacactttcataccttccacctcttactgaggaacaattggctaaggaagtagaataccttatca |
7009840 |
T |
|
| Q |
123 |
ggaagggatgggttgcttgcttggaatt |
150 |
Q |
| |
|
|||||||||||||| |||| |||||||| |
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|
| T |
7009841 |
ggaagggatgggttccttgtttggaatt |
7009868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 7006645 - 7006774
Alignment:
| Q |
21 |
tataggtgtggcctcctattggcaagaagaagtttgagactctttcataccttccaccattgaccagagaacaattggcgaaagaagttgaataccttat |
120 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||||| || ||||||||||||||||| | || || |||||||| || ||||| ||||||||||| |
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|
| T |
7006645 |
tataggtttggccaccaattggcaagaagaagtttgaaacactttcataccttccaccccttactgaggatcaattggctaaggaagtagaataccttat |
7006744 |
T |
|
| Q |
121 |
aaggaagggatgggttgcttgcttggaatt |
150 |
Q |
| |
|
||||||||||||||| |||| |||||||| |
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|
| T |
7006745 |
caggaagggatgggttccttgtttggaatt |
7006774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 7007237 - 7007282
Alignment:
| Q |
257 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatacta |
302 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7007237 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatacta |
7007282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 7010315 - 7010360
Alignment:
| Q |
257 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatacta |
302 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7010315 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatacta |
7010360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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