View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3516_low_15 (Length: 293)
Name: NF3516_low_15
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3516_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 53676182 - 53676451
Alignment:
| Q |
18 |
aactattaactttgataaccagattctagataaacaacaatgtaaagaccaattaggataaagcaatacacacaaatgaaatgacccttttaattaccat |
117 |
Q |
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| T |
53676182 |
aactattaactttgataaccagattctagataaacaacaatgtaaagaccaattaggataaagcaatacacacaaatgaaatgacccttttaattaccat |
53676281 |
T |
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| Q |
118 |
tctttcttcagggctgagactattccaggactgaccaatcattttggtaaactccctttctctgtttgggtagagttctttgagcttgtaatgcttttca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53676282 |
tctttcttcagggctgagactattccaggactgaccaatcattttggtaaactccctttctctgtttgggtagagttctttgagcttgtaatgcttttca |
53676381 |
T |
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| Q |
218 |
gcaaagaaaaagttatagccactcctatttggctttggatagttgggatcccactttctttttcttctct |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53676382 |
gcaaagaaaaagttatagccactcctatttggctttggatagttgggatcccactttctttttcttctct |
53676451 |
T |
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