View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3516_low_17 (Length: 292)

Name: NF3516_low_17
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3516_low_17
NF3516_low_17
[»] chr8 (1 HSPs)
chr8 (1-292)||(2160969-2161260)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 2161260 - 2160969
Alignment:
Q  1 tgcatagccttgtgcctatgcgttgtgtgtattttagagagaacaaattgaagatttatccgccattttatttatgtcacggcaaaaataaagtgtgaac 100  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2161260 tgcatagccttgtgcctatgtgttgtgtgtattttagagggaacaaattgaagatttatccaccattttatttatgtcacggcaaaaataaagtgtgaac 2161161  T
Q  101 atgaaaagaataacaaacaagttagatcagccttgtctaaggtatttcttgaaacattataaagtgcaagtttgtgaaggagattccaagattccctcgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  2161160 atgaaaagaataacaaacaagttagatcagccttgtctaaggtatttcttgaaacattatcaagtgcaagtttgtgaaggagattccaagattcactcgt 2161061  T
Q  201 ttgtgcagcatcagggaaacgatagaaacatgtaaagtgtcatccaggtcaataaaatttgatgagtgccattgtagcgaccattcaaaacc 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2161060 ttgtgcagcatcagggaaacgatagaaacatgtaaagtgtcatccaggtcaataaaatttgatgagtgccattgtagcgaccattcaaaacc 2160969  T

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