View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3516_low_18 (Length: 274)

Name: NF3516_low_18
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3516_low_18
NF3516_low_18
[»] chr8 (5 HSPs)
chr8 (1-256)||(9773816-9774071)
chr8 (3-91)||(2268555-2268641)
chr8 (1-89)||(21693141-21693227)
chr8 (1-89)||(5064204-5064290)
chr8 (1-91)||(38657174-38657263)
[»] chr6 (4 HSPs)
chr6 (1-256)||(20383204-20383458)
chr6 (1-240)||(14759603-14759843)
chr6 (1-79)||(1051150-1051227)
chr6 (1-79)||(18765618-18765694)
[»] chr2 (2 HSPs)
chr2 (1-252)||(13497607-13497858)
chr2 (1-80)||(13031971-13032046)
[»] chr4 (2 HSPs)
chr4 (1-256)||(28588702-28588954)
chr4 (1-92)||(8847785-8847874)
[»] chr7 (6 HSPs)
chr7 (1-171)||(2769069-2769234)
chr7 (1-92)||(27954010-27954099)
chr7 (1-92)||(29865135-29865224)
chr7 (1-92)||(27950848-27950937)
chr7 (1-79)||(5222283-5222359)
chr7 (1-79)||(43364178-43364254)
[»] chr3 (4 HSPs)
chr3 (6-253)||(23431058-23431299)
chr3 (1-79)||(4501048-4501124)
chr3 (1-75)||(27900457-27900529)
chr3 (82-194)||(23391599-23391710)
[»] chr5 (3 HSPs)
chr5 (1-242)||(17346210-17346447)
chr5 (1-77)||(4694431-4694505)
chr5 (13-77)||(42747073-42747135)
[»] scaffold0059 (1 HSPs)
scaffold0059 (2-163)||(5553-5711)
[»] scaffold0013 (1 HSPs)
scaffold0013 (2-81)||(239770-239848)
[»] chr1 (2 HSPs)
chr1 (1-92)||(19329304-19329392)
chr1 (53-98)||(45620344-45620388)
[»] scaffold0426 (1 HSPs)
scaffold0426 (184-247)||(2343-2404)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 9773816 - 9774071
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttctatgttaagg 100  Q
    |||||||||||||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9773816 tgatgtagtatcaaaagtaagtatgttttagtatcgtttccacaaggattagtgcgatattcgtaagccattcaacaattgttatcgttctatgttaagg 9773915  T
Q  101 gtttgtaaaatggtttgttttgaaaacctaatcgggctataatgcagtaaataaaactgagttaaacagaggattaaaactaatgggattagacaattca 200  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    ||| |||||||||||    
T  9773916 gtttgtaaaatggtttgtttcgaaaacctaatcggactataatgcagtaaataaaactgagttaaacagaggattaaaactgccaggagtagacaattca 9774015  T
Q  201 ttaaccaaacgtcgcatatattctcttgatcaagcatatagattctatctatcaat 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9774016 ttaaccaaacgtcgcatatattctcttgatcaagcatatagattctagctatcaat 9774071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 2268641 - 2268555
Alignment:
Q  3 atgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttct 91  Q
    |||||||||||||||||||||| ||||  |||||| | || | ||||||||||||||||| |||||||||||||||| | |||||||||    
T  2268641 atgtagtatcaaaagtaagtat-ttttgttatcgtctccatagggactagtgcgatattc-taagccgttcaacaatcggtatcgttct 2268555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 21693227 - 21693141
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgtt 89  Q
    ||||||| |||||||||||||||| |||   |||||| | || ||||||||| |||| ||||  ||||||||||||||| |||||||||    
T  21693227 tgatgtaatatcaaaagtaagtatttttgtgtatcgtctccacaaggactagcgcgacattc--aagccgttcaacaatcgttatcgtt 21693141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 5064290 - 5064204
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgtt 89  Q
    ||||||| |||||||||||||||| ||||  |||||| |||| | ||| | ||||||||||| |||||||||||||||| | |||||||    
T  5064290 tgatgtaatatcaaaagtaagtat-ttttgttatcgtcttcacagggattggtgcgatattc-taagccgttcaacaatcggtatcgtt 5064204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 38657174 - 38657263
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttct 91  Q
    ||||||||||| |||||||||||| ||||  ||| || |||| | | ||| ||||||||||| |||||||||||| ||| | |||||||||    
T  38657174 tgatgtagtattaaaagtaagtat-ttttgttattgtcttcataggaactggtgcgatattcttaagccgttcaataatcggtatcgttct 38657263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 8e-70; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 20383458 - 20383204
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttctatgttaagg 100  Q
    ||||||||| |||||||||||||||||||| |||| |||||||| ||||| ||| |||||||||||| |||||||||||||||||||||||| |||||||    
T  20383458 tgatgtagtgtcaaaagtaagtatgttttagtatctttttcaaagggactggtgtgatattcgtaagtcgttcaacaattgttatcgttctaagttaagg 20383359  T
Q  101 gtttgtaaaatggtttgtttt-gaaaacctaatcgggctataatgcagtaaataaaactgagttaaacagaggattaaaactaatgggattagacaattc 199  Q
    ||||||||||| |||| ||||  ||||||||||| | ||| ||||| |||| ||||||||||||||||||||   ||||  |  |||||||||||  |||    
T  20383358 gtttgtaaaatagttttttttctaaaacctaatcagactaaaatgcggtaattaaaactgagttaaacagagagataaacttgttgggattagac--ttc 20383261  T
Q  200 attaaccaaacgtcgcatatattctcttgatcaagcatatagattctatctatcaat 256  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||    
T  20383260 attaaccaaacgttgcatatattatcttgatcaagcatatagattctagctatcaat 20383204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 14759843 - 14759603
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttact----atcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttctatgtt 96  Q
    ||||||||||||||||||| |||||||| | |    ||||||| || | |||||||| ||||||||||||||||||||||||| |||||||||||  |||    
T  14759843 tgatgtagtatcaaaagtatgtatgtttaattttatatcgtttccatagggactagtacgatattcgtaagccgttcaacaatggttatcgttcttagtt 14759744  T
Q  97 aagggtttgtaaaatggtttgttttgaaaacctaatcgggctataatgcagtaaataaaactgagttaaacagaggattaaaactaatgggattagacaa 196  Q
    ||||||||  ||||| |||||||  |||| ||||||||| ||||||||  |||||| ||||| ||||||||| ||   |||||||  |||||||||  |     
T  14759743 aagggttttgaaaattgtttgttgcgaaatcctaatcggactataatgaggtaaat-aaactaagttaaacaaagacgtaaaactgttgggattag--at 14759647  T
Q  197 ttcattaaccaaacgtcgcatatattctcttgatcaagcatata 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14759646 ttcattaaccaaacgtcgcatatattctcttgatcaagcatata 14759603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 1051150 - 1051227
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaat 79  Q
    |||||||||||||||||||||||| ||||  |||||| | || | ||||| ||||||||||| ||||||||||||||||    
T  1051150 tgatgtagtatcaaaagtaagtattttttgttatcgtctccatagggactggtgcgatattc-taagccgttcaacaat 1051227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 18765618 - 18765694
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaat 79  Q
    |||||||||||||||||||||||| || |  |||||| | || | ||||||||||||||||| ||||||||||||||||    
T  18765618 tgatgtagtatcaaaagtaagtat-ttctgttatcgtctccatagggactagtgcgatattc-taagccgttcaacaat 18765694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 13497607 - 13497858
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgtt-atcgttctatgttaag 99  Q
    |||||||||||||||||||||||||| ||| |||| | |  | | ||||||||||||||||||||||||||||||||||| || |||||| || ||||||    
T  13497607 tgatgtagtatcaaaagtaagtatgtattagtatcatatctatagggactagtgcgatattcgtaagccgttcaacaattttttatcgttttaagttaag 13497706  T
Q  100 ggtttgtaaaatggtttgttttgaaaacctaatcgggctataatgc-agtaaataaaactgagttaaacagaggattaaaactaatgggattagacaatt 198  Q
    | |||||||||| |||||||  |||||||||||||| ||||||||| |  |||||||| ||||||| ||||||||||||| ||  |||| ||||||  ||    
T  13497707 gttttgtaaaattgtttgttgcgaaaacctaatcggactataatgcgataaaataaaattgagttagacagaggattaaagctgttggggttagac--tt 13497804  T
Q  199 cattaaccaaacgtcgcatatattctcttgatcaagcatatagattctatctat 252  Q
    ||||||  ||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  13497805 cattaagaaaatgtcgcatatattctcttaatcaagcatatagattctagctat 13497858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 13032046 - 13031971
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaatt 80  Q
    ||||||||||||| |||||||||  ||||  |||||| |||| || || ||||||||||||  |||||||||||||||||    
T  13032046 tgatgtagtatcataagtaagta--tttttgtatcgtcttcataaagattagtgcgatatt--taagccgttcaacaatt 13031971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 28588702 - 28588954
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttctatgttaagg 100  Q
    |||||||||||||| |||||||| |||||| ||||||||  | | ||| || |||||||||  ||||||||||||||||||||||||||||| |||| ||    
T  28588702 tgatgtagtatcaatagtaagtaagttttaatatcgtttctacagggattaatgcgatatta-taagccgttcaacaattgttatcgttctaagtta-gg 28588799  T
Q  101 gtttgtaaaatggtttgttttgaaaa-cctaatcgggctataatgcagtaaataaaactgagttaaacagaggattaaaactaatgggattagacaattc 199  Q
    |||| |||||| |||||||| ||||| ||||||||| ||||||||| |||||||||   |||||||||||||  ||||||||  |||||||||||  |||    
T  28588800 gtttttaaaattgtttgtttcgaaaaacctaatcggactataatgcggtaaataaactagagttaaacagagacttaaaactgctgggattagac--ttc 28588897  T
Q  200 attaaccaaacgtcgcatatattctcttgatcaagcatatagattctatctatcaat 256  Q
    | |||||||||||| ||||||||||| | || |  | ||||||||||| ||||||||    
T  28588898 actaaccaaacgtcacatatattctcataattagacgtatagattctagctatcaat 28588954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 8847785 - 8847874
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttcta 92  Q
    |||||||||||||||||||||||| |||   |||||| | || ||||||||| |||||||||  ||||||||||||||| ||||||||||||    
T  8847785 tgatgtagtatcaaaagtaagtatttttgtgtatcgtctccacaaggactagcgcgatattc--aagccgttcaacaatcgttatcgttcta 8847874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 2769069 - 2769234
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttctatgttaagg 100  Q
    |||||||||||||||||||    | ||||| ||||||||  | | | ||||||| ||||||  ||||||||||||||||||||||||||||| |||||||    
T  2769069 tgatgtagtatcaaaagta----tattttagtatcgtttctacaggtactagtgtgatatta-taagccgttcaacaattgttatcgttctaagttaagg 2769163  T
Q  101 gtttgtaaaatggtttgttttgaaaacctaatcgggctataatgcagtaaataaaactgagttaaacagag 171  Q
    ||||||||||| |||||||  || ||| ||||||| | | ||||| ||||||||||   ||||||||||||    
T  2769164 gtttgtaaaattgtttgttgcgagaacttaatcggacaaaaatgcggtaaataaaataaagttaaacagag 2769234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 27954010 - 27954099
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttcta 92  Q
    |||||||||||||||||||||||| |||   |||||| |  | | ||||||| |||||||||  ||||||||||||||| ||||||||||||    
T  27954010 tgatgtagtatcaaaagtaagtatttttgtgtatcgtctctagagggactagcgcgatattc--aagccgttcaacaatcgttatcgttcta 27954099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 29865224 - 29865135
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttcta 92  Q
    |||||||||||||||||||||||| |||   |||||| | || | |||||||||||||||||  ||| ||||||||||| | ||||||||||    
T  29865224 tgatgtagtatcaaaagtaagtatttttgtgtatcgtctccacatggactagtgcgatattc--aagtcgttcaacaatcgatatcgttcta 29865135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 27950848 - 27950937
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttcta 92  Q
    |||||||||||||||||||||||| |||   ||| |||| || |  |||||| |||||||||  ||||||||||| ||| ||||||||||||    
T  27950848 tgatgtagtatcaaaagtaagtatttttgtgtattgtttccacagagactagcgcgatattc--aagccgttcaataatcgttatcgttcta 27950937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 5222283 - 5222359
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaat 79  Q
    |||||||||||||||||||||||| ||||  |||||| | || | ||||| ||||||||||| |||||| |||||||||    
T  5222283 tgatgtagtatcaaaagtaagtat-ttttgttatcgtctccacagggactggtgcgatattc-taagccattcaacaat 5222359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 43364178 - 43364254
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaat 79  Q
    |||||||||||||||||||||||| || |  |||||| | || | ||||| ||||||||||| ||||||||||||||||    
T  43364178 tgatgtagtatcaaaagtaagtat-ttatgttatcgtctccacagggactggtgcgatattc-taagccgttcaacaat 43364254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 253
Target Start/End: Complemental strand, 23431299 - 23431058
Alignment:
Q  6 tagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttctatgttaagggtttg 105  Q
    |||||| ||||||||||||  |||| |||||||| || | ||||||||||||||||  |||||| |||||||||  ||||| ||||| |||||||||||     
T  23431299 tagtataaaaagtaagtat--tttaatatcgtttccacatggactagtgcgatatta-taagccattcaacaatgattatcattctaagttaagggttta 23431203  T
Q  106 taaaatggtttgttttgaaaacctaatcgggctataatgcagtaaataaaactgag-ttaaacagaggattaaaactaatgggattagacaattcattaa 204  Q
    ||| ||  |||||| |||||| ||| | |  |||| |||| ||||||||||| ||| ||  ||||||   ||||| || |||||||||||  |||||| |    
T  23431202 taagattctttgttatgaaaa-ctatttgaactattatgcggtaaataaaac-gagattggacagagacataaaaatactgggattagac--ttcattga 23431107  T
Q  205 ccaaacgtcgcatatattctcttgatcaagcatatagattctatctatc 253  Q
    |||||||||||||||||  || ||||||| ||||||||||||| |||||    
T  23431106 ccaaacgtcgcatatatcttcatgatcaaacatatagattctagctatc 23431058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 4501048 - 4501124
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaat 79  Q
    |||||||||||||||||||||||| ||||  |||||| | || | ||||||||||||||||| ||||||||||||||||    
T  4501048 tgatgtagtatcaaaagtaagtat-ttttgttatcgtctccacatggactagtgcgatattc-taagccgttcaacaat 4501124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 27900457 - 27900529
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaa 75  Q
    |||||||||||||||||||||||| || |  |||||||| || | ||||| ||||||||||| ||||||||||||    
T  27900457 tgatgtagtatcaaaagtaagtat-ttatgttatcgtttccacatggactggtgcgatattc-taagccgttcaa 27900529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 23391710 - 23391599
Alignment:
Q  82 ttatcgttctatgttaagggtttgtaaaatggtttgttttgaaaacctaatcgggctataatgcagtaaataaaactgag-ttaaacagaggattaaaac 180  Q
    ||||| ||||||||||||||||| ||||||  |||||| |||||| ||| | |  ||||||||| ||||||||||| ||| ||| |||||| | ||||||    
T  23391710 ttatcattctatgttaagggtttataaaattatttgttatgaaaa-ctatttgaactataatgcggtaaataaaac-gagattagacagagaagtaaaac 23391613  T
Q  181 taatgggattagac 194  Q
    |  |||||||||||    
T  23391612 tgttgggattagac 23391599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 17346210 - 17346447
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttctatgttaagg 100  Q
    |||||||||||||||||||||||| ||||  |||| |||||| | ||||||||||||||||  ||||  |||||| |||| ||||||| ||| || | |     
T  17346210 tgatgtagtatcaaaagtaagtatatttttgtatcattttcatatggactagtgcgatattt-taagttgttcaataattattatcgtcctaagtgatga 17346308  T
Q  101 gtttgtaaaa-tggtttgttttgaaaacc-taatcgggctataatgcagtaaataaaactgagttaaacagaggattaaaactaatgggattagacaatt 198  Q
    |   ||| || | |||||||||| ||||| ||||||  ||||||||| |||| ||| |  |||||||||||||   |||||||  |||||||||||  ||    
T  17346309 g---gtataacttgtttgttttgtaaaccataatcgaactataatgcggtaattaagatagagttaaacagagatataaaactgctgggattagac--tt 17346403  T
Q  199 cattaaccaaacgtcgcatatattctcttgatcaagcatataga 242  Q
    |||||| ||||| ||||| ||||||||||| |||| ||||||||    
T  17346404 cattaagcaaacctcgcacatattctcttggtcaatcatataga 17346447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4694505 - 4694431
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaaca 77  Q
    |||||||||||||||||||||||| ||||  |||||| |||| ||||||| ||||||| ||| |||| |||||||||    
T  4694505 tgatgtagtatcaaaagtaagtat-ttttgttatcgtcttcacaaggactggtgcgattttc-taagtcgttcaaca 4694431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 42747073 - 42747135
Alignment:
Q  13 aaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaaca 77  Q
    |||||||||||| ||||| ||||||||||| | |||||||||||||| || ||| ||||||||||    
T  42747073 aaaagtaagtat-ttttaatatcgttttcacacggactagtgcgata-tcataaaccgttcaaca 42747135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 5553 - 5711
Alignment:
Q  2 gatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttctatgttaaggg 101  Q
    |||||||||||||||||||||||  |||  |||| |||  ||| | ||||||||||||||  |||||||||||||||||| ||||||| || || | |||    
T  5553 gatgtagtatcaaaagtaagtataattttgtatcatttctaaacgaactagtgcgatatt--taagccgttcaacaattgatatcgttttaagtgatggg 5650  T
Q  102 tttgtaaaatggtttgttttgaaaacctaatcgggctataatgcagtaaataaaactgagtt 163  Q
    ||| | || | |||||||| ||||||||||| |  ||||| || | ||||||||| ||||||    
T  5651 tttat-aatttgtttgtttagaaaacctaatagaactatagtgaaataaataaaattgagtt 5711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 239848 - 239770
Alignment:
Q  2 gatgtagtatcaaaagtaagtatgttttactatcgttttcaaa-aggactagtgcgatattcgtaagccgttcaacaattg 81  Q
    |||||||||||||||||||||||  |||  |||||||||||||  |||||||||||||||||  |||||||||||||||||    
T  239848 gatgtagtatcaaaagtaagtataattttgtatcgttttcaaatgggactagtgcgatattc--aagccgttcaacaattg 239770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 19329304 - 19329392
Alignment:
Q  1 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttcta 92  Q
    |||||||||||||||||||||||| |||| ||||||| | || | ||||| |||||||||||  ||||||||||||||| | ||| ||||||    
T  19329304 tgatgtagtatcaaaagtaagtat-ttttgctatcgtctccacagggactggtgcgatattc--aagccgttcaacaatcgatattgttcta 19329392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 45620388 - 45620344
Alignment:
Q  53 tgcgatattcgtaagccgttcaacaattgttatcgttctatgttaa 98  Q
    |||||||||| |||||||||||||||||| |||||||||| |||||    
T  45620388 tgcgatattc-taagccgttcaacaattgatatcgttctaagttaa 45620344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 2404 - 2343
Alignment:
Q  184 tgggattagacaattcattaaccaaacgtcgcatatattctcttgatcaagcatatagattcta 247  Q
    |||||||||||  |||| | ||||| |||||||||||||||| |||||| ||||||||||||||    
T  2404 tgggattagac--ttcactgaccaatcgtcgcatatattctcatgatcatgcatatagattcta 2343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University