View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3516_low_21 (Length: 257)
Name: NF3516_low_21
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3516_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 11983995 - 11983755
Alignment:
| Q |
14 |
ataaaaacactccatctttcgtagttgtcagaggtaagtacttcaggaactattccaacggaggcaacactcgtggctttcattttattgcctcttcagg |
113 |
Q |
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| T |
11983995 |
ataaaaacactccatctttcgtagttgtcagaggtaagtacttcaggaactattccaacggaggcaacactcgtggctttcattttattgcctcttgagg |
11983896 |
T |
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| Q |
114 |
aactatttgagagttggaaatttgcacgttaacgtgaacttgggatctttgtcaaaaatagaaagtgaacttgggatccaat-----atactaatcaagt |
208 |
Q |
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| T |
11983895 |
aactatttgagagttggaaatttgcacgttaacgtgaacttgggatctttgtcaaaaatagaaagtgaacttgggatccaataaggaatactaatcaagt |
11983796 |
T |
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| Q |
209 |
gacctataaataaagacactcaggtcaataatgtaatagta |
249 |
Q |
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| T |
11983795 |
gacctataaataaagacactcaggtcaataatgtaatagta |
11983755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 12050052 - 12049808
Alignment:
| Q |
21 |
cactccatctttcgtagttgtcagaggta---agtacttcaggaactattccaacggaggcaacactcgtggctttcattttattgcctcttcaggaact |
117 |
Q |
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| T |
12050052 |
cactccatcttttgtagttgtcagaagaagtgagtacttcaggaactattccaacagaggcaacactcgtggctttcattttattgcctcttgaggaact |
12049953 |
T |
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| Q |
118 |
atttgagagttggaaatttgcacgttaacgtgaacttgggatctttgtcaaaaatagaaagtgaacttgggatccaat-----atactaatcaagtgacc |
212 |
Q |
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| T |
12049952 |
atttgagagttggaactttgcacgttaacgtgaacttgggatctttgtcaaaaatagaaagtgaacttgggatccaataaagaatacgagtcaagtaaac |
12049853 |
T |
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| Q |
213 |
tataaataaagacactcaggtcaataatgtaatagtaccgttttt |
257 |
Q |
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| T |
12049852 |
tataaataaagacactcaggtcagtaatgtaatagtagcgttttt |
12049808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 12047328 - 12047220
Alignment:
| Q |
14 |
ataaaaacactccatctttcgtagttgtcagaggtaagtacttcaggaactattccaacggaggcaacactcgtggctttcattttattgcctcttcagg |
113 |
Q |
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||||||||||||||| |||||||||||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| ||| |
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| T |
12047328 |
ataaaaacactccat---tcgtagttgtcaaaggtgagtacttcaggaactattctaacagaggcaacactcgtggctttcattttattgcttctagagg |
12047232 |
T |
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| Q |
114 |
aactatttgaga |
125 |
Q |
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| T |
12047231 |
aactaattgaga |
12047220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 12097572 - 12097662
Alignment:
| Q |
14 |
ataaaaacactccatctttcgtagttgtcagaggtaagtacttcaggaactattccaac---ggaggcaacactcgtggctttcattttat |
101 |
Q |
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|||| ||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |
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| T |
12097572 |
ataagaacactccatctttcatagttatcaaaggtcagtacttcaggaactattccaaccgaggagggaacactcgtggatttcattttat |
12097662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 12116906 - 12116995
Alignment:
| Q |
14 |
ataaaaacactccatctttcgtagttgtcagaggtaagtacttcaggaactattccaac---ggaggcaacactcgtggctttcatttta |
100 |
Q |
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|||| ||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
12116906 |
ataagaacactccatctttcatagttatcaaaggtcagtacttcaggaactattccaaccgaggagggaacactcgtggatttcatttta |
12116995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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