View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3516_low_25 (Length: 247)
Name: NF3516_low_25
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3516_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 8544597 - 8544780
Alignment:
| Q |
1 |
cttctccctatctacaatggtattttaaggtcctgcacaaaaacccacaatttaattcaagcaacaaaatgtttggacttgatggaaaagaagatgatag |
100 |
Q |
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| T |
8544597 |
cttctccctatctacaatggtattttaaggtcctgcactaaaacccacaatttaattcaagcaacaaaatgtttggacttgatggaaaagaagatgatag |
8544696 |
T |
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| Q |
101 |
ggaagaatgaagttacctatactgcgcttctccaggtgtgcaatgtgcatattaaaacatatattactctcaacaacacaaatt |
184 |
Q |
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| T |
8544697 |
ggaagaatgaagtaacctatactgcgcttctccaggtgtgcaatgtgcatattaaaacatatattactctcaacaacacaaatt |
8544780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 8609836 - 8610019
Alignment:
| Q |
1 |
cttctccctatctacaatggtattttaaggtcctgcacaaaaacccacaatttaattcaagcaacaaaatgtttggacttgatggaaaagaagatgatag |
100 |
Q |
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| T |
8609836 |
cttctccctatctacaatggtattttaaggtcctgcactaaaacccacaatttaattcaagcaacaaaatgtttggacttgatggaaaagaagatgatag |
8609935 |
T |
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| Q |
101 |
ggaagaatgaagttacctatactgcgcttctccaggtgtgcaatgtgcatattaaaacatatattactctcaacaacacaaatt |
184 |
Q |
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| T |
8609936 |
ggaagaatgaagtaacctatactgcgcttctccaggtgtgcaatgtgcatattaaaacatatattactctcaacaacacaaatt |
8610019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 25015490 - 25015619
Alignment:
| Q |
13 |
tacaatggtattttaaggtcctgcacaaaaacccacaatttaattcaagcaacaaaatgtttggacttgatggaaaagaagatgatagggaagaatgaag |
112 |
Q |
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| T |
25015490 |
tacaatagtattttaaggtcctacacagaaatccagaatttagttcaagcaagaaaatgtttggacttgatggaaaaacagatgataggaaagagtgaag |
25015589 |
T |
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| Q |
113 |
ttacctatactgcgcttctccaggtgtgca |
142 |
Q |
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| T |
25015590 |
ttacttatactgcacttctcaaggtatgca |
25015619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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