View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3516_low_26 (Length: 241)
Name: NF3516_low_26
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3516_low_26 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 5344681 - 5344905
Alignment:
| Q |
18 |
catctgaactgtaatcatcaagatttacgcgatttataatactatgaccattttcctgaaaattcaatgaaaggaacccttaaaaatacacaatttcaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5344681 |
catctgaactgtaatcatcaagatttacgcgatttataatactatgaccattttcctgaaaattcaatgaaaggaacccttaaaaatacacaatttcaca |
5344780 |
T |
|
| Q |
118 |
nnnnnnnn-acttggtcatctagtttatgaagcactaacatgacactagtaataatttataaaagtgaaataatataatgtaactgcatgtgttggtatt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5344781 |
tttttttttacttggtcatctagtttatgaagcactaacatgacactagtaataatttataaaagtgaaataatataatgtaactgcatgtgttggtatt |
5344880 |
T |
|
| Q |
217 |
gattcaagagcggaagagaatgaat |
241 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5344881 |
gattcaagagcggaagagaatgaat |
5344905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University