View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3516_low_27 (Length: 240)

Name: NF3516_low_27
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3516_low_27
NF3516_low_27
[»] chr6 (8 HSPs)
chr6 (19-240)||(13609035-13609256)
chr6 (109-182)||(31560766-31560839)
chr6 (109-182)||(33642559-33642632)
chr6 (111-182)||(9168826-9168897)
chr6 (109-148)||(33412003-33412042)
chr6 (111-182)||(33390124-33390195)
chr6 (109-182)||(33059613-33059686)
chr6 (109-153)||(33273842-33273886)
[»] chr4 (9 HSPs)
chr4 (39-231)||(31244993-31245185)
chr4 (109-182)||(31019838-31019911)
chr4 (113-182)||(31159291-31159360)
chr4 (114-182)||(31029724-31029792)
chr4 (109-170)||(31489647-31489708)
chr4 (112-204)||(31476909-31477001)
chr4 (35-182)||(31496884-31497031)
chr4 (112-181)||(31502054-31502123)
chr4 (109-157)||(31034019-31034067)
[»] chr5 (1 HSPs)
chr5 (22-182)||(17599288-17599447)
[»] chr8 (1 HSPs)
chr8 (184-231)||(6472633-6472680)
[»] chr2 (1 HSPs)
chr2 (111-205)||(35054251-35054348)
[»] chr7 (1 HSPs)
chr7 (140-182)||(14724344-14724386)


Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 13609256 - 13609035
Alignment:
Q  19 caattgggccataacctctataaattttactcacatcatcaataaagcaacatctagcaaattgattggagattctagggcacaaagctttagcaagagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609256 caattgggccataacctctataaattttactcacatcatcaataaagcaacatctagcaaattgattggagattctagggcacaaagctttagcaagagt 13609157  T
Q  119 tgtctttcctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaaattcagaaggttttctaattcttccactcgtgagtgc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609156 tgtctttcctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaaattcagaaggttttctaattcttccactcgtgagtgc 13609057  T
Q  219 atcccaactatattgccaggta 240  Q
    ||||||||||||||||||||||    
T  13609056 atcccaactatattgccaggta 13609035  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 31560839 - 31560766
Alignment:
Q  109 tagcaagagttgtctttcctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaaa 182  Q
    ||||||| | |||||| |||||||| |||||||||||||| |||| ||| |||||| ||||||| |||||||||    
T  31560839 tagcaagggctgtcttccctattcctcccattccacaaattcctataacacgaacaccatcatccgagtccaaa 31560766  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 33642632 - 33642559
Alignment:
Q  109 tagcaagagttgtctttcctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaaa 182  Q
    ||||||| |||||||| |||||||| |||||||||||||| |||| | | |||||| ||||| |||||||||||    
T  33642632 tagcaagggttgtcttccctattcctcccattccacaaattcctatagcacgaacaccatcaactgagtccaaa 33642559  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 9168826 - 9168897
Alignment:
Q  111 gcaagagttgtctttcctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaaa 182  Q
    |||||||||||||| |||||||| |||||||||||||| |||| | | |||||| |||||  ||||||||||    
T  9168826 gcaagagttgtcttccctattcctcccattccacaaattcctatagcacgaacaccatcaattgagtccaaa 9168897  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 33412003 - 33412042
Alignment:
Q  109 tagcaagagttgtctttcctattccgcccattccacaaat 148  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  33412003 tagcaagggttgtctttcctattccgcccattccacaaat 33412042  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 33390124 - 33390195
Alignment:
Q  111 gcaagagttgtctttcctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaaa 182  Q
    ||||| |||||||| |||||||| |||||||||||||| |||| | |  ||||| ||||| |||||||||||    
T  33390124 gcaagggttgtcttccctattcctcccattccacaaattcctatagcatgaacaccatcaactgagtccaaa 33390195  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 33059613 - 33059686
Alignment:
Q  109 tagcaagagttgtctttcctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaaa 182  Q
    ||||||| ||||| || |||||||| |||||||||||||| |||| | | |||||| ||||| |||||| ||||    
T  33059613 tagcaagggttgttttccctattcctcccattccacaaattcctatagcacgaacaccatcaactgagttcaaa 33059686  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 33273842 - 33273886
Alignment:
Q  109 tagcaagagttgtctttcctattccgcccattccacaaatcccta 153  Q
    ||||||| |||||||| |||||||| |||||||||||||| ||||    
T  33273842 tagcaagggttgtcttccctattcctcccattccacaaattccta 33273886  T

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Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 39 - 231
Target Start/End: Complemental strand, 31245185 - 31244993
Alignment:
Q  39 taaattttactcacatcatcaataaagcaacatctagcaaattgattggagattctagggcacaaagctttagcaagagttgtctttcctattccgccca 138  Q
    ||||||||||| ||||| ||||||||||| ||   | |||||||||| |||||||||    |||||||  |||||||||| ||||| |||||||| ||||    
T  31245185 taaattttacttacatcctcaataaagcagcaagcatcaaattgattagagattctatcatacaaagcagtagcaagagtagtcttccctattccaccca 31245086  T
Q  139 ttccacaaatccctacaactcgaacatcatcatctgagtccaaattcagaaggttttctaattcttccactcgtgagtgcatcccaactatat 231  Q
    |||||||||||||||| ||||||||||||||||||||||||| | ||| ||| |||||||||||||| |||||||||||||||||||||||||    
T  31245085 ttccacaaatccctaccactcgaacatcatcatctgagtccataatcaaaagcttttctaattcttcgactcgtgagtgcatcccaactatat 31244993  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 31019838 - 31019911
Alignment:
Q  109 tagcaagagttgtctttcctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaaa 182  Q
    |||| ||||||||||| |||||||| ||||| |||||||| |||||||| |||||||||||| | |||||||||    
T  31019838 tagccagagttgtcttccctattccacccatcccacaaattcctacaacccgaacatcatcaaccgagtccaaa 31019911  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 31159291 - 31159360
Alignment:
Q  113 aagagttgtctttcctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaaa 182  Q
    |||||||||||| |||||||| ||||| |||||||| |||||||| |||||||||||| | |||||||||    
T  31159291 aagagttgtcttccctattccacccatcccacaaattcctacaacccgaacatcatcaacggagtccaaa 31159360  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 31029724 - 31029792
Alignment:
Q  114 agagttgtctttcctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaaa 182  Q
    ||||||||||| |||||||| ||||| |||||||| |||||||| |||||||||||| | |||||||||    
T  31029724 agagttgtcttccctattccacccatcccacaaattcctacaacccgaacatcatcaaccgagtccaaa 31029792  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 31489708 - 31489647
Alignment:
Q  109 tagcaagagttgtctttcctattccgcccattccacaaatccctacaactcgaacatcatca 170  Q
    |||| ||||||||||| |||||||| ||||| |||||||| |||||||| ||||||||||||    
T  31489708 tagccagagttgtcttccctattccacccatcccacaaattcctacaacccgaacatcatca 31489647  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 204
Target Start/End: Complemental strand, 31477001 - 31476909
Alignment:
Q  112 caagagttgtctttcctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaaattcagaaggttttctaattctt 204  Q
    |||| |||||||| |||||||| ||||| |||||||| ||||||||  ||||||||||| | |||||||||   | ||| |||||||||||||    
T  31477001 caagggttgtcttccctattccacccatcccacaaattcctacaacatgaacatcatcaacagagtccaaaagtaaaagcttttctaattctt 31476909  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 182
Target Start/End: Complemental strand, 31497031 - 31496884
Alignment:
Q  35 tctataaattttactcacatcatcaataaagcaacatctagcaaattgattggagattctagggcacaaagctttagcaagagttgtctttcctattccg 134  Q
    |||| ||||||| || |||||||||||||| || |||  | |||||||||| |||||| |||   |||||||  ||||||| || ||||| ||||||||     
T  31497031 tctaaaaattttgcttacatcatcaataaaacatcatgcatcaaattgattagagattttagcatacaaagcagtagcaagggtagtcttccctattcct 31496932  T
Q  135 cccattccacaaatccctacaactcgaacatcatcatctgagtccaaa 182  Q
    ||||| |||||||| ||||  || ||| |||||| | | |||||||||    
T  31496931 cccatcccacaaattcctatgacacgaccatcattaaccgagtccaaa 31496884  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 31502123 - 31502054
Alignment:
Q  112 caagagttgtctttcctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaa 181  Q
    |||| |||||||| |||||||| ||||| ||||| || |||||| || ||||||||||| | ||||||||    
T  31502123 caagggttgtcttccctattccacccatcccacagattcctacagcttgaacatcatcaacagagtccaa 31502054  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 31034019 - 31034067
Alignment:
Q  109 tagcaagagttgtctttcctattccgcccattccacaaatccctacaac 157  Q
    |||| ||||| |||||||||||||| ||||||||| |||| ||||||||    
T  31034019 tagctagagtcgtctttcctattcctcccattccataaattcctacaac 31034067  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 17599288 - 17599447
Alignment:
Q  22 ttgggccataacctctataaattttactcacatcatcaataaagcaacatctagcaaattgattggagattctagggcacaaagctttagcaagagttgt 121  Q
    ||||||||||  ||| |||||||||||| ||||| || ||||||||  | | | ||||||||||  |||||||||   ||||||| ||| ||||||| |     
T  17599288 ttgggccatagtctccataaattttacttacatcgtcgataaagcacaagcaa-caaattgattacagattctagcatacaaagcattaacaagagtagc 17599386  T
Q  122 ctttcctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaaa 182  Q
    ||| |||||||  | ||||||||||||||||||| ||||||||||||  ||||||||||||    
T  17599387 cttccctattcaactcattccacaaatccctacagctcgaacatcattgtctgagtccaaa 17599447  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 6472633 - 6472680
Alignment:
Q  184 tcagaaggttttctaattcttccactcgtgagtgcatcccaactatat 231  Q
    |||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  6472633 tcagaaagttttgtaattcttccacttgtgagtgcatcccaactatat 6472680  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 35054251 - 35054348
Alignment:
Q  111 gcaagagttgtctttcctattccgcccattccacaaatccctacaactcgaa---catcatcatctgagtccaaattcagaaggttttctaattcttc 205  Q
    ||||||||||||||||| |||||  |||| || ||||| |||||||||||||   ||||||||||||||   || |||| |||  |||||||||||||    
T  35054251 gcaagagttgtctttccgattccagccatcccccaaatacctacaactcgaagttcatcatcatctgagcttaatttcaaaagactttctaattcttc 35054348  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 14724386 - 14724344
Alignment:
Q  140 tccacaaatccctacaactcgaacatcatcatctgagtccaaa 182  Q
    |||||||||||||||| ||||||||||||  ||||||||||||    
T  14724386 tccacaaatccctacagctcgaacatcattgtctgagtccaaa 14724344  T

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