View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3516_low_29 (Length: 226)
Name: NF3516_low_29
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3516_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 8544779 - 8544966
Alignment:
| Q |
28 |
tttcttagctaaattttgaaaacaacaaaaggttttctaaaaccaacgggtccttattatgtctgaaagaactttcatgtttatcgaatttgtgattcaa |
127 |
Q |
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| T |
8544779 |
tttcgtagctaaattttgaaaacaacaaaaggttttctaaaaccaatgggtccttattatgtctgaaagaactttcatgtttatcgaatttgtgattcaa |
8544878 |
T |
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| Q |
128 |
tgtgaaaattgctaatcacttggaccaagatgcatgttcttattattattgttattcataggatgggaaatcatcactgttttatatt |
215 |
Q |
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| T |
8544879 |
tgtgaaaattgctaatcacttggaccaagatgcatgttcttattattattgttattcataggatgggaaatcatcactttgttatatt |
8544966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 8610018 - 8610205
Alignment:
| Q |
28 |
tttcttagctaaattttgaaaacaacaaaaggttttctaaaaccaacgggtccttattatgtctgaaagaactttcatgtttatcgaatttgtgattcaa |
127 |
Q |
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| T |
8610018 |
tttcgtagctaaattttgaaaacaacaaaaggttttctaaaaccaatgggtccttattatgtctgaaagaactttcatgtttatcgaatttgtgattcaa |
8610117 |
T |
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| Q |
128 |
tgtgaaaattgctaatcacttggaccaagatgcatgttcttattattattgttattcataggatgggaaatcatcactgttttatatt |
215 |
Q |
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| T |
8610118 |
tgtgaaaattgctaatcacttggaccaagatgcatgttcttattattattgttattcataggatgggaaatcatcactttgttatatt |
8610205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 25015781 - 25015878
Alignment:
| Q |
7 |
ataagaagttgtttgcattcttttcttagctaaattttgaaaacaacaaaaggttttctaaaaccaacgggtccttattatgtctgaaagaactttca |
104 |
Q |
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| T |
25015781 |
ataaaaagttgtttgcattgttttctgcgctaaaatttgaaaacaggaaaaagttttctaaaaccaacaggttgttatcaagtctgaaagaactttca |
25015878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 25016015 - 25016053
Alignment:
| Q |
180 |
tattcataggatgggaaatcatcactgttttatattctt |
218 |
Q |
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| T |
25016015 |
tattcataggatgggaaaacatcactgtgttatattctt |
25016053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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