View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3516_low_4 (Length: 584)
Name: NF3516_low_4
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3516_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 13 - 567
Target Start/End: Original strand, 30619121 - 30619675
Alignment:
| Q |
13 |
aatatcagttagtgaactatcaatgaataaattcaagctcaataaactaaggttcatgaatcaaattagtaatagttcatgtggtatttgcaaatgtata |
112 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30619121 |
aatatcagttaatgaactatcaatgaataaattcatgctcaataaactaaggttcatgaatcaaattagtaatagttcatgtggtatttgcaaatgtata |
30619220 |
T |
|
| Q |
113 |
gtaccttctcaatgacgcaacgtactcttgccttgtcatatgcttcatttcttccacttctttttcataatggctaatctaaaattcattcattgttgac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30619221 |
gtaccttctcaatgacgcaacgtactcttgccttgtcatatgcttcatttcttccacttctttttcataatggctaatctaaaattcattcattgttgac |
30619320 |
T |
|
| Q |
213 |
caacacatagaaatatccaatatcaacaagttgttatcacattaaaatataaagttttgcattataagggaaagaaaattaaacagacacattccatcaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30619321 |
caacacatagaaatatccaatatcaacaagttgttatcacattaaaatataaagttttgcattataagggaaagaaaattaaacagacacattccatcaa |
30619420 |
T |
|
| Q |
313 |
atgaggaaattaatttacttttcattgtacatggacaccaatatatgaatcacccatcactattgcttggttatttttggtaacatcactattgcttggt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30619421 |
atgaggaaattaatttacttttcattgtacatggacaccaatatatgaatcacccaccactattgcttggttatttttggtaacatcactattgcttggt |
30619520 |
T |
|
| Q |
413 |
taatgccaaaagaccaacatgttccttaattcattgtgataatatatataaaaaggagcaaattaaaagagtaagtggaaattaactcactggaaaattt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30619521 |
taatgccaaaagaccaacatgttccttaattcattgtgataatatatataaaaaggagcaaattaaaagagtaagtggaaattaactcactggaaaattt |
30619620 |
T |
|
| Q |
513 |
gttgtagtagttgttccccaatattttagtgctgccaaatcataggctctagctg |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30619621 |
gttgtagtagttgttccccaatattttagtgctgccaaatcataggctctagctg |
30619675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University