View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3516_low_5 (Length: 523)
Name: NF3516_low_5
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3516_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Original strand, 46451963 - 46452468
Alignment:
| Q |
1 |
tcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaataga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451963 |
tcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaataga |
46452062 |
T |
|
| Q |
101 |
tttctataggaagacgattaaggtttagggtttatgattaggagccaatacatgaaactttatgtatattcgtatggaatttcataaagcatatttt-tt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46452063 |
tttctataggaagacgattaaggtttagggtttatgattaggagccaatacatgaaactttatgtatattcgtatggaatttcataaagcatattttttt |
46452162 |
T |
|
| Q |
200 |
atcattgatttgaagcaaatttcttgatgttgattaaagcctaaaagcttgtaattgtcacaaaattgtgttattgacttctataaggggggcatgatta |
299 |
Q |
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| T |
46452163 |
atcattgatttgaagcaaatttcttgatgttgattaaagcctaaaagcttgtaattgtcacaaaattgtgttattgacttctataaggggggcatgatta |
46452262 |
T |
|
| Q |
300 |
aggtctataaaatttgcggttagaagccaacaccaatctataaatataaatagtagtttctctttgaggtttttcttagttttaatttttaagataggga |
399 |
Q |
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| T |
46452263 |
aagtctataaaatttgcggttagaagccaacaccaatctataaatataaatagtagtttctctttgaggtttttcttagttttaatttttaagagaggga |
46452362 |
T |
|
| Q |
400 |
gagtaattattcactcctatggcatgatttgatgaatttgtacaaatgcataatacttgacaataaaatactctattagagagggtataacacccttcga |
499 |
Q |
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| T |
46452363 |
gagtaattattcactcctatggcatgatttgatgaatttgtacaaatgcataatacttgacaataaaatactctattagagagggtataacacccttcga |
46452462 |
T |
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| Q |
500 |
atgagt |
505 |
Q |
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|||||| |
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| T |
46452463 |
atgagt |
46452468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 46344593 - 46344489
Alignment:
| Q |
1 |
tcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaataga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46344593 |
tcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcctttacagagtatgttaagggtacctcccttgtgtaataga |
46344494 |
T |
|
| Q |
101 |
tttct |
105 |
Q |
| |
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||||| |
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| T |
46344493 |
tttct |
46344489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 46462931 - 46463035
Alignment:
| Q |
1 |
tcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaataga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46462931 |
tcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcctttacagagtatgttaagggtacctcccttgtgtaataga |
46463030 |
T |
|
| Q |
101 |
tttct |
105 |
Q |
| |
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||||| |
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| T |
46463031 |
tttct |
46463035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 46471565 - 46471756
Alignment:
| Q |
8 |
atgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaa-tagatttcta |
106 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| ||||||||||| |||| || || |
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| T |
46471565 |
atgcagagctttggaatggaagaattgctatgttgggtttgattgctctggctgttacagaatatgttaagggtactgcccttgtgtaagtagagtttta |
46471664 |
T |
|
| Q |
107 |
taggaagacgattaagg--tttagggtttatgattaggagccaatacatgaaactttatgtatattcgtatggaatttcataaagcatatttt |
197 |
Q |
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| T |
46471665 |
tagggacatgattaaagtctatagggtttgtggttagaagccaa-agatagaaccttatgtatattcttatgtaatttcttaaataatatttt |
46471756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 46466360 - 46466448
Alignment:
| Q |
8 |
atgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaa |
96 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| ||||||||||| |
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| T |
46466360 |
atgcagagctttggaatggaagaattgctatgttgggtttgattgctctggctgttacagaatatgttaagggtactgcccttgtgtaa |
46466448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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