View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3516_low_6 (Length: 466)
Name: NF3516_low_6
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3516_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 201 - 446
Target Start/End: Original strand, 2161590 - 2161835
Alignment:
| Q |
201 |
tataaagtaatgtcacctcataattccaaaacactaaaattgtttgttgcatggataaaacaaacaattttattgaaatagacacattcaagcacaaggt |
300 |
Q |
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| T |
2161590 |
tataaagtaatgtgacctcataattccaaaacactaaacttgtttgttgcatggataaaacaaacaattttattgaaatagacacattcaagcacaaggt |
2161689 |
T |
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| Q |
301 |
gtgcaagaatatgagtactcatatgcttcttgcattaagaagacgtgaataatatttgccgtgtaaaaaataaaagaaatactaactagattctaaattt |
400 |
Q |
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| T |
2161690 |
gtgcaagaatattagtactcatatgcttcttgcattaagaagacgtgaataacatttcccgtgtaaaaaatagaagaaatactaactagattctaaattt |
2161789 |
T |
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| Q |
401 |
caaaagctagataccctaccaagctagatgtaattctagataccct |
446 |
Q |
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| T |
2161790 |
caaaagctagataccctaccaagctagatgtaattctagataccct |
2161835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 2161329 - 2161385
Alignment:
| Q |
84 |
atcgaaatgttcgttgttaacacaatcataaacgatttaaggattgatatattaaaa |
140 |
Q |
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| T |
2161329 |
atcgaaatgttcgttgttaacacaatcataaacgatttaaggattgatatattaaaa |
2161385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 2161287 - 2161336
Alignment:
| Q |
17 |
tgaatttgcaaggttgactcaattaaaatatttgtaaaacagatcgaaat |
66 |
Q |
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| T |
2161287 |
tgaatttgcaaggttgactcaattaaaatatttgtaaaacagatcgaaat |
2161336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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