View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3516_low_7 (Length: 455)

Name: NF3516_low_7
Description: NF3516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3516_low_7
NF3516_low_7
[»] chr3 (10 HSPs)
chr3 (5-455)||(24357759-24358201)
chr3 (26-273)||(24365137-24365385)
chr3 (204-313)||(24351016-24351125)
chr3 (364-455)||(24365528-24365619)
chr3 (219-313)||(24354350-24354444)
chr3 (204-270)||(24369326-24369392)
chr3 (216-303)||(24361660-24361747)
chr3 (216-313)||(24313065-24313162)
chr3 (233-303)||(24344010-24344080)
chr3 (79-144)||(24369459-24369523)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 5 - 455
Target Start/End: Complemental strand, 24358201 - 24357759
Alignment:
Q  5 tattctttctagaaatacaagagtgaaagttaaacgatattc--gtgttatgtgtgtatccataataaagtttcttgtgctaatattttgttttgttgaa 102  Q
    |||||||||||||||||||| ||||| |||||||| ||||||  ||||||||||| ||||||||||||| ||||| |||| |||||||||||||||||||    
T  24358201 tattctttctagaaatacaacagtgatagttaaacaatattcatgtgttatgtgtatatccataataaaatttctagtgccaatattttgttttgttgaa 24358102  T
Q  103 aagttctagctagtgctaatatcataaaca---aatatgtgaaatgcaaatatgacatgttatatgtgtgatgtgtggttatatgctaagaattctaaag 199  Q
    |||||||||    |||||||||  ||||||   ||||||| ||||| | |||| |||||||  ||||||||||            |||||||||||||||    
T  24358101 aagttctag----tgctaatattgtaaacagaaaatatgttaaatgaatatataacatgttgcatgtgtgatg------------ctaagaattctaaag 24358018  T
Q  200 taa-tta--gtactaataagaatgcttacaatcctatgaagattagtttggaggatgatcttgaagaaacggatgggcagagtaaaatttcttctagcca 296  Q
    ||| |||  ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  24358017 taaattactgtactgataggaatgcttacaatcctatgaagattagtttggaggatgatcttgaagaaacggatggggagagtagaatttcttctagcca 24357918  T
Q  297 tggatgaaagagtttgataaaatatttgattttgttaccctccgatggcatatttaagctagcaaacctctttatttgttaatggtaaacttagaattaa 396  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24357917 tggatgaaagagtttgataaaatatttgattttgttactctccgatggcatatttaagctagcaaacctctttatttgttaatggtaaacttagaattaa 24357818  T
Q  397 gctacatacctaatgtcattattacatctaccaataaaatcgtgcgactcttcatattt 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24357817 gctacatacctaatgtcattattacatctaccaataaaatcgtgcgactcttcatattt 24357759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 26 - 273
Target Start/End: Original strand, 24365137 - 24365385
Alignment:
Q  26 agtgaaagttaaacgatattc--gtgttatgtgtgtatccataataaagtttcttgtgctaatattttgttttgttgaaaagttctagctagtgctaata 123  Q
    |||| ||||||||||||||||  ||||||| ||| |||||||||||||  |||| ||||||||||||||||||||||||| |||||||    ||||||||    
T  24365137 agtggaagttaaacgatattcatgtgttatatgtctatccataataaaacttctagtgctaatattttgttttgttgaaatgttctag----tgctaata 24365232  T
Q  124 tcataaaca---aatatgtgaaatgcaaatatgacatgttatatgtgtgatgtgtggttatatgctaagaattctaaagtaattagtactaataagaatg 220  Q
    |  ||||||   ||||||| ||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24365233 ttgtaaacagaaaatatgttaaatgcatatatgacatgttgcatgtgtgatgtgtggttatatgctaagaattctaaagtaattagtactaataagaatg 24365332  T
Q  221 cttacaatcctatgaagattagtttggaggatgatcttgaagaaacggatggg 273  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  24365333 cttacaatcctttgaagattagtttggaggatgatcttgaagaaaaggatggg 24365385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 204 - 313
Target Start/End: Complemental strand, 24351125 - 24351016
Alignment:
Q  204 tagtactaataagaatgcttacaatcctatgaagattagtttggaggatgatcttgaagaaacggatgggcagagtaaaatttcttctagccatggatga 303  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| || |||  |||||| ||||||||||||||    
T  24351125 tagtactaataggaatgcttacaatcctttgaagattagtttggagaataatcttgaagaaacggatgggaagtgtagcatttctcctagccatggatga 24351026  T
Q  304 aagagtttga 313  Q
      ||||||||    
T  24351025 cggagtttga 24351016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 364 - 455
Target Start/End: Original strand, 24365528 - 24365619
Alignment:
Q  364 ctctttatttgttaatggtaaacttagaattaagctacatacctaatgtcattattacatctaccaataaaatcgtgcgactcttcatattt 455  Q
    ||||| |||| ||||||||||||||| ||||||||||  | |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24365528 ctcttcatttattaatggtaaacttataattaagctaactgcctaatgtcattattacatctaccaagaaaatcgtgcgactcttcatattt 24365619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 24354444 - 24354350
Alignment:
Q  219 tgcttacaatcctatgaagattagtttggaggatgatcttgaagaaacggatgggcagagtaaaatttcttctagccatggatgaaagagtttga 313  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| |  ||| |||||| |||||||||||||||  ||||||||    
T  24354444 tgctcacaatcctttgaagattagtttggaggatgatcttgaagaaatggatggggaaggtagaatttcctctagccatggatgatggagtttga 24354350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 24369392 - 24369326
Alignment:
Q  204 tagtactaataagaatgcttacaatcctatgaagattagtttggaggatgatcttgaagaaacggat 270  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  24369392 tagtactaaaaagaatgcttacaatcctatgaagattagtttgaaggatgattttgaagaaacggat 24369326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 303
Target Start/End: Complemental strand, 24361747 - 24361660
Alignment:
Q  216 gaatgcttacaatcctatgaagattagtttggaggatgatcttgaagaaacggatgggcagagtaaaatttcttctagccatggatga 303  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||| |  ||||| |||   |||| |||||||||||||||    
T  24361747 gaatgcttacaatcctttgaagatttgtttggaggatgatcttgaagaaacgaaatggcagggtagtttttcctctagccatggatga 24361660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 216 - 313
Target Start/End: Complemental strand, 24313162 - 24313065
Alignment:
Q  216 gaatgcttacaatcctatgaagattagtttggaggatgatcttgaagaaacggatgggcagagtaaaatttcttctagccatggatgaaagagtttga 313  Q
    |||||||||||||||| |||||||||||||| || || |||||||||||||||||||| || ||   |||||| ||| ||||||||||  ||||||||    
T  24313162 gaatgcttacaatcctttgaagattagtttgaagaataatcttgaagaaacggatgggaagtgttggatttctcctaaccatggatgatggagtttga 24313065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 24344080 - 24344010
Alignment:
Q  233 tgaagattagtttggaggatgatcttgaagaaacggatgggcagagtaaaatttcttctagccatggatga 303  Q
    |||||||||| |||||||||||||||||| ||| ||||||| |  |||  |||||| || |||||||||||    
T  24344080 tgaagattagattggaggatgatcttgaaaaaatggatgggaaaggtagcatttctccttgccatggatga 24344010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 24369523 - 24369459
Alignment:
Q  79 gtgctaatattttgttttgttgaaaagttctagctagtgctaatatcataaac---aaatatgtgaaat 144  Q
    ||||||||||||||||| |||||||||||    ||||||||||||| ||||||   |||||||||||||    
T  24369523 gtgctaatattttgtttagttgaaaagtt----ctagtgctaatattataaacagaaaatatgtgaaat 24369459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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